HsaALTD0002643-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000136877 | FPGS
Description
folylpolyglutamate synthase [Source:HGNC Symbol;Acc:HGNC:3824]
Coordinates
chr9:127807673-127808301:+
Coord C1 exon
chr9:127807673-127807775
Coord A exon
NA
Coord C2 exon
chr9:127808234-127808301
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAAGTTGAG
5' ss Score
-10.48
3' ss Seq
TCTCCTTCTTCCCTCCACAGCAA
3' ss Score
11.75
Exon sequences
Seq C1 exon
AGGGGGCATCTTTAAGGTGACCAGGCAGACTGGGGGAAGGGAGAGACATGGAAGGCCTGGGAGTCTACGTTTTCATCCTGGCTTCACTGTGTGACTGGAACAA
Seq A exon
NA
Seq C2 exon
CAAGGTGTCCCTGCCTTCACTGTGCTCCAACCTGAAGGTCCCCTGGCAGTGCTGAGGGACCGAGCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136877-17-33,19-33-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF082457=Mur_ligase_M=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGCATCTTTAAGGTGACC
R:
GCTCGGTCCCTCAGCACT
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development