HsaALTD0002643-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000136877 | FPGS
Description
folylpolyglutamate synthase [Source:HGNC Symbol;Acc:3824]
Coordinates
chr9:130569952-130570580:+
Coord C1 exon
chr9:130569952-130569967
Coord A exon
NA
Coord C2 exon
chr9:130570513-130570580
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACC
5' ss Score
6.78
3' ss Seq
TCTCCTTCTTCCCTCCACAGCAA
3' ss Score
11.75
Exon sequences
Seq C1 exon
AGGGGGCATCTTTAAG
Seq A exon
NA
Seq C2 exon
CAAGGTGTCCCTGCCTTCACTGTGCTCCAACCTGAAGGTCCCCTGGCAGTGCTGAGGGACCGAGCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136877-15-23,16-23-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082457=Mur_ligase_M=FE(19.0=100)
A:
NA
C2:
PF082457=Mur_ligase_M=FE(14.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)