HsaALTD0002643-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000136877 | FPGS
Description
folylpolyglutamate synthase [Source:HGNC Symbol;Acc:3824]
Coordinates
chr9:130569952-130570580:+
Coord C1 exon
chr9:130569952-130569967
Coord A exon
chr9:130569968-130570054
Coord C2 exon
chr9:130570513-130570580
Length
87 bp
Sequences
Splice sites
5' ss Seq
CAAGTTGAG
5' ss Score
-10.48
3' ss Seq
TCTCCTTCTTCCCTCCACAGCAA
3' ss Score
11.75
Exon sequences
Seq C1 exon
AGGGGGCATCTTTAAG
Seq A exon
GTGACCAGGCAGACTGGGGGAAGGGAGAGACATGGAAGGCCTGGGAGTCTACGTTTTCATCCTGGCTTCACTGTGTGACTGGAACAA
Seq C2 exon
CAAGGTGTCCCTGCCTTCACTGTGCTCCAACCTGAAGGTCCCCTGGCAGTGCTGAGGGACCGAGCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136877-15-23,16-23-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082457=Mur_ligase_M=FE(19.0=100)
A:
NA
C2:
PF082457=Mur_ligase_M=FE(14.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)