HsaALTD0002712-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000165219 | GAPVD1
Description
GTPase activating protein and VPS9 domains 1 [Source:HGNC Symbol;Acc:23375]
Coordinates
chr9:128083712-128086202:+
Coord C1 exon
chr9:128083712-128083778
Coord A exon
chr9:128083779-128083841
Coord C2 exon
chr9:128086077-128086202
Length
63 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
3' ss Seq
CACTATAAACATTTCTCTAGGTC
3' ss Score
7.32
Exon sequences
Seq C1 exon
GTCCTAAACATGCAGCTTTCGGATGGAGGACAAGGAGATGTCCCTGTTGATGAAAACAAACTCCATG
Seq A exon
GTAAACCTGATAAAACCTTGCGCTTTTCCCTCTGCAGTGATAATCTGGAAGGAATATCTGAAG
Seq C2 exon
GTCCTTCAAATCGCTCCAATTCAGTGTCCTCCCTAGACCTAGAAGGAGAGTCTGTGTCAGAACTTGGAGCAGGACCTTCTGGCAGTAATGGAGTTGAAGCTCTACAGCTGTTAGAACATGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165219-22-23,23-23-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.982 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF153241=TALPID3=FE(19.9=100)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTCGGATGGAGGACAAGG
R:
TTACTGCCAGAAGGTCCTGCT
Band lengths:
141-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)