GgaALTD0000286-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000000993 | GAPVD1
Description
NA
Coordinates
chr17:10333591-10334511:+
Coord C1 exon
chr17:10333591-10333657
Coord A exon
chr17:10333658-10333720
Coord C2 exon
chr17:10334386-10334511
Length
63 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
3' ss Seq
CAATAAAATATTTTTTACAGGTC
3' ss Score
6.98
Exon sequences
Seq C1 exon
GTCTTAAATATGCAGCTTGCAGATGGCGGACAAGGAGATGTCCCTGTTGATGAAAACAAACTCCATG
Seq A exon
GTAAACCTGATAAAACCTTGCGCTTTTCACTCTGCAGTGATAATCTGGAAGGAATATCTGAAG
Seq C2 exon
GTCCTTCAAATCGCTCCAACTCAGTATCATCTTTGGATTTGGAAGGGGAGTCTGTATCAGAGCTCGGTGCAGGTCCGTCTGGGAGCAATGGTGTTGAAGCTCTGCAGCTGCTGGAGCATGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000993-9-8,10-8-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGCGGACAAGGAGATGT
R:
AGCTTCAACACCATTGCTCCC
Band lengths:
148-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]