RnoALTD0012208-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000017925 | Gapvd1
Description
GTPase activating protein and VPS9 domains 1 [Source:RGD Symbol;Acc:1307479]
Coordinates
chr3:13786183-13788135:-
Coord C1 exon
chr3:13788069-13788135
Coord A exon
chr3:13788006-13788068
Coord C2 exon
chr3:13786183-13786308
Length
63 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
3' ss Seq
CAGGATAAACATTTTTCTAGGTC
3' ss Score
4.6
Exon sequences
Seq C1 exon
GTTCTAAACATGCAGCTTTCGGACGGAGGACAAGGAGATGTCCCTGTTGATGAAAACAAACTCCACG
Seq A exon
GTAAACCTGATAAAACCTTGCGCTTTTCCCTGTGCAGTGATAATCTGGAAGGCATATCTGAAG
Seq C2 exon
GTCCTTCCAATCGCTCTAATTCAGTGTCTTCTCTCGACCTGGAAGGAGAGTCTGTATCTGAACTTGGGGCAGGACCTTCTGGGAGTAATGGAGTTGAAGCACTGCAACTGTTAGAACACGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017925-19-14,20-14-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.864 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGGAGGACAAGGAGATGT
R:
TTACTCCCAGAAGGTCCTGCC
Band lengths:
135-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]