HsaALTD0002713-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000165219 | GAPVD1
Description
GTPase activating protein and VPS9 domains 1 [Source:HGNC Symbol;Acc:HGNC:23375]
Coordinates
chr9:125331974-125332629:+
Coord C1 exon
chr9:125331974-125332017
Coord A exon
NA
Coord C2 exon
chr9:125332510-125332629
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
TTTACTATTGTTTTTTAAAGGCA
3' ss Score
7.57
Exon sequences
Seq C1 exon
GTTCTGGACTGGGTAGCACATCTGATGATACGGATGTCAGGGAG
Seq A exon
NA
Seq C2 exon
GCATAAGTGCAACCTCTGAGGATATTCCCAATAAGATTGAAGACCTGAGATCTGAGTGCAGCTCTGATTTTGGGGGTAAAGATTCTGTCACTAGTCCAGACATGGATGAAATAACTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165219-58-66,59-66-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.963
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACTGGGTAGCACATCTGA
R:
TCCATGTCTGGACTAGTGACAGA
Band lengths:
146-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development