HsaALTD0003079-1/3 @ hg38
Alternative 5'ss
Gene
ENSG00000170144 | HNRNPA3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
Coordinates
chr2:177216908-177219159:+
Coord C1 exon
chr2:177216908-177216913
Coord A exon
NA
Coord C2 exon
chr2:177219037-177219159
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTGGAT
5' ss Score
-1.34
3' ss Seq
TAAAACCTTTCTGATTTCAGGTA
3' ss Score
8.96
Exon sequences
Seq C1 exon
GTGATG
Seq A exon
NA
Seq C2 exon
GTAACTATGGTGGTGGTGGGAACTATAATGATTTTGGAAATTATAGTGGACAACAGCAATCAAATTATGGACCCATGAAAGGGGGCAGTTTTGGTGGAAGAAGCTCGGGCAGTCCCTATGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170144-30-30,31-30,32-30-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.565 A=NA C2=0.757
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF116273=HnRNPA1=PU(94.7=85.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development