RnoALTD0013821-2/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000052968 | Hnrnpa3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:RGD Symbol;Acc:727807]
Coordinates
chr3:62485010-62485904:+
Coord C1 exon
chr3:62485010-62485024
Coord A exon
chr3:62485025-62485030
Coord C2 exon
chr3:62485804-62485904
Length
6 bp
Sequences
Splice sites
5' ss Seq
ATGGTGGAT
5' ss Score
-1.34
3' ss Seq
ACCAGGATATGGAAACCAAGGTG
3' ss Score
-5.04
Exon sequences
Seq C1 exon
GCAGTTATGGAGGTG
Seq A exon
GTGATG
Seq C2 exon
GTGGTGGATATGGTGGTGGAGGAGGAGGATATGATGGTTACAATGAAGGAGGAAATTTTGGTGGAGGTAAGTTATAGATACCTGGATTAAATGCAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052968-20-13,21-13,22-13,23-13-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.679 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]