HsaALTD0003317-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000143319 | ISG20L2
Description
interferon stimulated exonuclease gene 20kDa-like 2 [Source:HGNC Symbol;Acc:25745]
Coordinates
chr1:156696698-156698307:-
Coord C1 exon
chr1:156698207-156698307
Coord A exon
chr1:156698146-156698206
Coord C2 exon
chr1:156696698-156697561
Length
61 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
AGGATCACTTTCTTCCCCAGGGT
3' ss Score
7.84
Exon sequences
Seq C1 exon
CGTTCTAACCCGCGCGCCTGCCTTCCCGGGCTTCGTCGGCGCGCACCGATTTCCGCATCCGGCTCCGGACGCTTCCGGTCTTAGCTGGACCCGTCTGGGAG
Seq A exon
GTAGGTTTGTGAGCGTGAGAGATCGATCTGTACCGCGGGGATCCGAAGTATGCTTATCCAG
Seq C2 exon
GGTGTACTACAGACCTCCACATGTTGGACAGTAGGATTCAGCAGAGAATGAGTCCCACATCCTCTTTTCATCCATAAGCCACTCTTCCCAACTACTCTTCCGCCTTCCATTGTCCCTATGTCTACTTTACTGCTCAATCTGGATTTTGGGGAACCTCCTCCCAAAAAGGCATTAGAAGGAAATGCCAAGCACCGAAATTTTGTCAAGAAGCGGAGGCTCTTAGAACGGAGAGGCTTTCTGAGTAAAAAGAACCAACCCCCTAGCAAGGCGCCTAAGTTGCACTCTGAACCTTCAAAGAAAGGGGAAACTCCTACGGTCGATGGCACTTGGAAGACCCCTTCCTTCCCAAAAAAGAAGACAGCTGCTTCCAGCAATGGGTCAGGACAGCCCCTGGACAAGAAAGCTGCAGTGTCTTGGTTGACCCCTGCCCCTTCAAAAAAGGCTGATTCTGTTGCTGCTAAAGTAGATTTGCTGGGGGAGTTCCAGAGTGCCCTTCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143319-0-1,1-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.651
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0118215=Glucosamine_iso=WD(100=40.2),PF0092919=RNase_T=PU(44.2=27.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTTAGCTGGACCCGTCT
R:
GGACAATGGAAGGCGGAAGAG
Band lengths:
140-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)