HsaALTA0004366-1/2 @ hg19
Alternative 3'ss
Gene
ENSG00000143319 | ISG20L2
Description
interferon stimulated exonuclease gene 20kDa-like 2 [Source:HGNC Symbol;Acc:25745]
Coordinates
chr1:156697034-156698591:-
Coord C1 exon
chr1:156698207-156698591
Coord A exon
NA
Coord C2 exon
chr1:156697034-156697561
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
AGGATCACTTTCTTCCCCAGGGT
3' ss Score
7.84
Exon sequences
Seq C1 exon
GCGGGCCAAGTTCCAGTTCCCGCCCCTTGCCGTACACTCCTCTCCTCTTACGGAAGTGAAGCCGGAGGTGTCCGGCGGGCTGCAGTTCCGGTTTATCGCGGCCTTCCCACACCTTCGCGTTGTACCACCACGGGGCTAGAGGGGCCGGGGAGCGCATCCCGCCCCCGCCCCCACCCACGCCGCCCCCTCCTCCGCCGCCACTGCCGCTCCTCACACACTCGGAATCACTGGCCTCACTACCTGGGGTCGGGGCGGTGCGGGTGTGCGCGCGCCGACCTCTGGCGCGTTCTAACCCGCGCGCCTGCCTTCCCGGGCTTCGTCGGCGCGCACCGATTTCCGCATCCGGCTCCGGACGCTTCCGGTCTTAGCTGGACCCGTCTGGGAG
Seq A exon
NA
Seq C2 exon
GGTGTACTACAGACCTCCACATGTTGGACAGTAGGATTCAGCAGAGAATGAGTCCCACATCCTCTTTTCATCCATAAGCCACTCTTCCCAACTACTCTTCCGCCTTCCATTGTCCCTATGTCTACTTTACTGCTCAATCTGGATTTTGGGGAACCTCCTCCCAAAAAGGCATTAGAAGGAAATGCCAAGCACCGAAATTTTGTCAAGAAGCGGAGGCTCTTAGAACGGAGAGGCTTTCTGAGTAAAAAGAACCAACCCCCTAGCAAGGCGCCTAAGTTGCACTCTGAACCTTCAAAGAAAGGGGAAACTCCTACGGTCGATGGCACTTGGAAGACCCCTTCCTTCCCAAAAAAGAAGACAGCTGCTTCCAGCAATGGGTCAGGACAGCCCCTGGACAAGAAAGCTGCAGTGTCTTGGTTGACCCCTGCCCCTTCAAAAAAGGCTGATTCTGTTGCTGCTAAAGTAGATTTGCTGGGGGAGTTCCAGAGTGCCCTTCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143319-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.651
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0118215=Glucosamine_iso=WD(100=40.2),PF0092919=RNase_T=PU(44.2=27.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTAGCTGGACCCGTCTGG
R:
AGGCGGAAGAGTAGTTGGGAA
Band lengths:
128-167
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)