BtaALTA0015102-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000001518 | ISG20L2
Description
Bos taurus interferon stimulated exonuclease gene 20kDa-like 2 (ISG20L2), mRNA. [Source:RefSeq mRNA;Acc:NM_001046217]
Coordinates
chr3:14154160-14155628:+
Coord C1 exon
chr3:14154160-14154183
Coord A exon
chr3:14154780-14154886
Coord C2 exon
chr3:14154887-14155628
Length
107 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
AGGATCGCTTTCTTCCCTAGGGT
3' ss Score
9.39
Exon sequences
Seq C1 exon
GGTCTTAGCGGGTCCATCTAGGAG
Seq A exon
GGTATGCTGCAAACCTCCAAATGCTGGTCTGTGGGATTCAGCAGATGAGTCTTCTATCTTCCTCTCATCTGTAAGCTGTTCTTCCCAACTGTTCTCTCACCATCCAG
Seq C2 exon
TGTCATCATGTCTACCTTACTCCTCAATCTGGATTTTGGCGAGCCTCCCCCCAAAAAGGCATTAGAGGGAAATGCCAAGCACCGAAAATTTGTCAAGAAGAGGCGACTGTTGGAACGGAAAGGCTTCCTCAATAAGAAGAAGCAGCCCCCTAGCAAGGTGCCTAAGTTGCACTCAGAACCTTCACAGAAAGGGGAAACTCCCAGGGTAGATGGCACTTGGAAGGCCACTCCCCTTCCAAAGAAGAAGACAACAGCTGCCTCCAGCAGTGGGTCAGAGCAGTCCCTGGACAAGAAAGCTGCAGTGCCTTGGCTGACTCCTGCCCCTTCACAGAAGGCTGGTTCTGTTGTGGCTAAAGTAGATTTGCTGGGGGAGTTCCAGAGCGCCCTACCAAAGATTAAGAGCCACCCAACTCGCCCCCAGAAGAAGGGATCCCAGAAGAATCCTCCACCCAAGAATGGCCCACAGAACTCCACCCATACACATTCAGAGAATAAATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001518-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.624
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0092919=RNase_T=PU(44.2=28.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTAGCGGGTCCATCTAGGA
R:
GCCTTCCAAGTGCCATCTACC
Band lengths:
248-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development