BtaINT0077552 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001518 | ISG20L2
Description
Bos taurus interferon stimulated exonuclease gene 20kDa-like 2 (ISG20L2), mRNA. [Source:RefSeq mRNA;Acc:NM_001046217]
Coordinates
chr3:14154160-14155628:+
Coord C1 exon
chr3:14154160-14154183
Coord A exon
chr3:14154184-14154779
Coord C2 exon
chr3:14154780-14155628
Length
596 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
AGGATCGCTTTCTTCCCTAGGGT
3' ss Score
9.39
Exon sequences
Seq C1 exon
GGTCTTAGCGGGTCCATCTAGGAG
Seq A exon
GTAAGTGAGTGAGCGTGCGAGGCAGGCTCCGCGGCGTGGATGGCAGCTGATCCTTAGACTCGGTTCCTTCCCCCACCAGTGTGTGTTGTCAAAGGTCCTTTCGTGGGACAGAGACTTGAGTGAGATGCATGTGGAGATTTCCCCCACCTGGAAACGAGGGAGATGAGTGCCTGAATTTGTATCTCTACTCGTGGGACCCGCGTGGGGATGCTAGGGTAATCCAGAGGTCAACTTTGCCAAACCTGTCACTGCCTTTGAGCATACTTAGACGTTCCCTCCATGGGCAGATGATAGAGTTCACCTATTCTGGCGTTGTAGATCGCAGTTTCAGCTAGTTGGTTTTGCGACCCCCTAAGTTTACAAATGAGACTGAGATCTAGAGAGGGGACATGGCCTTCCTAATACCATACAGCTGGTGAATTGTGGAGCTTTCTAGAATCCAGGCTTCCTGGTTCAGAATGAAGTTCTCCTTCTGTCATTTCACATTATTTGAGAGGTTATTCTGATGTCTTTCCTCTCTCTTAAGTCCTGCAAAGATGGGTCTTATTGATTCCCAAGCCTATGGGCTCCGTTATCAGGATCGCTTTCTTCCCTAG
Seq C2 exon
GGTATGCTGCAAACCTCCAAATGCTGGTCTGTGGGATTCAGCAGATGAGTCTTCTATCTTCCTCTCATCTGTAAGCTGTTCTTCCCAACTGTTCTCTCACCATCCAGTGTCATCATGTCTACCTTACTCCTCAATCTGGATTTTGGCGAGCCTCCCCCCAAAAAGGCATTAGAGGGAAATGCCAAGCACCGAAAATTTGTCAAGAAGAGGCGACTGTTGGAACGGAAAGGCTTCCTCAATAAGAAGAAGCAGCCCCCTAGCAAGGTGCCTAAGTTGCACTCAGAACCTTCACAGAAAGGGGAAACTCCCAGGGTAGATGGCACTTGGAAGGCCACTCCCCTTCCAAAGAAGAAGACAACAGCTGCCTCCAGCAGTGGGTCAGAGCAGTCCCTGGACAAGAAAGCTGCAGTGCCTTGGCTGACTCCTGCCCCTTCACAGAAGGCTGGTTCTGTTGTGGCTAAAGTAGATTTGCTGGGGGAGTTCCAGAGCGCCCTACCAAAGATTAAGAGCCACCCAACTCGCCCCCAGAAGAAGGGATCCCAGAAGAATCCTCCACCCAAGAATGGCCCACAGAACTCCACCCATACACATTCAGAGAATAAATACTCTGGGGTATCCCAGAAGATACCGGGGAAGATGGTGGCAATTGACTGTGAGATGGTGGGTACTGGACCCAAGGGGCATGTCAGTTCCTTGGCTCGATGTAGCATTGTCAACTACGACGGAGATGTGCTCTATGATGAGTACATCCTCCCCCCCTGCCACATTGTGGACTACCGGACCAGATGGAGTGGTATCCGGAAGCAGCACATGGTGAATGCTACACCCTTCAAGATTGCTCGGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001518:ENSBTAT00000001989:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.624
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0092919=RNase_T=PU(44.2=28.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTAGCGGGTCCATCTAGGA
R:
GCCTTCCAAGTGCCATCTACC
Band lengths:
355-951
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]