RnoINT0075725 @ rn6
Intron Retention
Gene
ENSRNOG00000011402 | Isg20l2
Description
interferon stimulated exonuclease gene 20-like 2 [Source:RGD Symbol;Acc:1359413]
Coordinates
chr2:187302192-187304117:+
Coord C1 exon
chr2:187302192-187302433
Coord A exon
chr2:187302434-187303168
Coord C2 exon
chr2:187303169-187304117
Length
735 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
TGGTCTTCTTTTTCTCTCAGGCC
3' ss Score
9.72
Exon sequences
Seq C1 exon
CGAGGGGCCGGGGAGCGCATCCCGCCCCCGCCCCCACCCACGCCGCCACCGCCGCCACCACCGTTGCCACTGCTCACTCACTCCGAGTCCCTGGCCTCGCTGCCTGAGGTGGGGGCGCTGCGGGCGCGTGTGCGCCGGCCGCCTTCCCGTTGCCGCCCGCGTTCTTGCCGTCCGGGCATACGTCGACGCGCGCCTGCATCCGGCTCCGGACGCTTGCGATTTTAGTGGGACCTAACTTGGAG
Seq A exon
GTAGGTATATAGGTGTTCGGGGATGGTTGGGGGACCGTCAACAGTGGCGGAGGTGTCCTGTCTGGATCCTCCTCCACTTAGATCCTCTGCTGTGTGGTGTCACAGGTTCTTATGTTGGGGCCAGGCAAGGTAGATCGCTCCTCCACGTGGAGCCTAGGGAGAGCGATACCTGGATTTGCTCTTCATTTTGTAGCACGTTGAGGATTCCTGGGTGATCCGGAGGACATCTCAGGACTGGCAAATGTTCTTAGAAGTTTCATTTCTCTGCTGTTTCAGTACGCATTTGTTTTGACTACGATAGAGTTCGATCTTTGTGGACCCCACACCCTTTTATCTCCAGCCTTAGCATCCTCACTTTATGTTATTGGTTTTCTTTGTGTGAGTGTTTTGTTTGTATTTATATATGTGTATCGTTTAATTGCCTGGGGCCTACAGAGATCAGAAAGCATCTAATTTTTCTGAAACTGGAGATACAGATGCTGTGAATTACTACTACCATGTGGGTGCTGGGAACCGAACTTCACATCTCTGCAAGACCAACAGGTTATAACTACTAAGTCATCTCTCCAGCCCCAGCATCTTTAGTTTTTAGAATGACACAGATCTGGAGAGGGGAAACAACCCTTTTAAGATCAACCTAAGGGTGAGTTGTGGGGGCTTCGTTAGTTATCCAGGCTTTGGGCTTGCAGAATTGGTCACTTAAGTCTTCCAGAATTGGTCTTCTTTTTCTCTCAG
Seq C2 exon
GCCTATGGTGCAAGTATCAGGATTACTTTTGCCCCCAAGGCTAATTGCAGATCTCCTCATGTTGAACTATGGGATTCCACAGAGAATGAGACTCTCATCCTTTTTCCATCAGTGAGCCACTCTTCCCAGCTTTCTCCCACCATCCACTGACCTCATGTCTACCATACTCCTGAATTTGGACTTTGGGGAACCTTCGAAAAAGGCATTTGGAGGAAATGCCAAACATCAACGTTTTGTCAAGAAGCGAAGGTTCTTGGAACAGAAAGGATTTCTGAGTAAAAAGAACCAACCCCCTAGCAAGGTGTCTAAATTAAACTCAGAACCTCCAAAGAAAGGGGAAACTTCAAGAGTAGATAGCATTTCGAAGATCCTTTCATGCCTAAAGAAGAAGAAAGAGGCAGCTGCCTCCAAGAGGGACTCAGAACAGTCCAAAGACAAGAAAGCATCATTGTCATGGCTGACCCCTGCTCCTTCAAAGAAGACTGATTCTGTTGTGGCTAAAATAGATTTGCTTGGGGAGTTTCAGAGTGCCCTTCCAAAGCCTAAGAGACGCACCCAGAAGAAGGGCTCTAAGAAGCCCTTGAAAAAGAAAATTGCTACAGAAAACTCCACCCAAACTCAGTCAAAGGATAAAGGCTCCAACAAGAAGCCCTTGAAGAAAAATGCTGTACAGAACTCCACCCAAGCTCAACCAGAGGATAAGTGCCCTAAAGTCCCTCAAAGCTTGCCAAGGAAGATGGTGGCAATAGACTGTGAAATGGTGGGCACGGGACCCAAGGGGCGTGTGAGTTCCTTGGCTCGCTGCAGCATCGTGAATTACAATGGAGATGTGCTTTATGATGAGTACATCCGCCCCCCCTGCTATATCGTGGACTACCGGACCAGGTGGAGTGGCATCCGGAAGTGCCACATGGTTAATGCTACCCCCTTTAAGACTGCTCGGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011402:ENSRNOT00000015471:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.502
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0092919=RNase_T=PU(44.2=26.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGGACGCTTGCGATTTTA
R:
ACCTTGCTAGGGGGTTGGTTC
Band lengths:
342-1077
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]