MmuINT0083411 @ mm9
Intron Retention
Gene
ENSMUSG00000048039 | Isg20l2
Description
interferon stimulated exonuclease gene 20-like 2 [Source:MGI Symbol;Acc:MGI:2140076]
Coordinates
chr3:87734236-87736197:+
Coord C1 exon
chr3:87734236-87734533
Coord A exon
chr3:87734534-87735252
Coord C2 exon
chr3:87735253-87736197
Length
719 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
CTGATCTTCTTTTCTCTCAGGCC
3' ss Score
10.26
Exon sequences
Seq C1 exon
GTTCCGCTTCCCGCGGCCCACCACCTTCGAGTTGTACCTCCACGGGGCCCGAGGGGCCGGGGAGCGCATCCCGCCCCCGCCCCCACCCACGCCGCCGCCGCCGCCACCGCCGTTCCCGCTGCTCACGCACTCCGAGTCGCTGGCCTCGCTGCCTGAGGTGGGGGCGCTGCGGGCGCGTGCGCGCCGGCCGCCTTCCCGTTGTCGCCCGCGTTCTTGCCGTCCCGGCATACGTCGGCGCGCGCCTGCGCCTGCATCCGGCTTCGGACGCTTGCGATCTTAGTGGGGAACCAACTTGGAG
Seq A exon
GTAGGTGTATAGGGTGTTCGGGAATAGTTCGTGGATCGTCAAGAATGTGGTGGCCGAGGTGGCTGGCCCTCCACTGTGTCCTTACTGTGGGAGACAGGTAAGGTATGTGAGGAGATCGCCCCCACGTGGAGCCGAGGGAGCGCGACACCTGGATTTGGTCTTCATTTCGTAGCACGCTGAGAATTCCTGGGTGATCCAGAGGGTATTTGTGTTGTTTCTTCTCACCACTGGTACTTAAAAGTCTCATCTGACGCCCTTGTTTTGACTTCATAGACATGATAGAGTCGATCTCCGTGGGTCCCACATCTTTTTATCCGCAGCCTCAGCACCCTCATTTTATGTAATTAGATTTATTATTTGTCTGAGTGTTTTGTTTGTATTTATGTATGTGTATCGTTTAATTGCCCGGGGCCTGCAGAGATCGGAAGGCATCTAGTTTTTTCTGAAGCTGGAGGTACAGATGCTGTGAACTACTACAACGTGGGTGCCTGGAACTGAACTTAATATCTCTGCGAGAGCAACAAGGTTATAACTACTAAGGCGTTTCTCCAGCCCCAGCATCTTTAGTTTTTAAAATGGCACAGAGATCCGGAGAAGGGAAATAACCCTTTTAAGACCAACCTAAAGGTGAATTGTGGAGGCTTCAGTAGTTAGCCGGGCTTTGGGGCTTGTGGAAGTTATCACTTATGTCTTCCAGAACTGATCTTCTTTTCTCTCAG
Seq C2 exon
GCCTATGGTGCGGGAATCAGGATTACTTTGTCCCCAAGGCTGATTGCAGACCTCCACATGTTGAACTATGGGATTCCACAGAGGATGAGCCTCTCATCCTTTTGCTATCAGTGAGCCATTCTTCCCAGCTTCCTCCCACCATCCACTGATCTCATGTCTACCATACTCCTGAATTTAGACTTTGGGCAACCTTCGAAAAAGGCATTTGGAGGAAATGCCAAACATCAACGCTTTGTCAAGAAGCGAAGGTTCTTGGAACAGAAAGGATTTCTGAATAAAAAGAACCAACCCCCTAACAAGGTGTCTAAGTTGAACTCAGAACCTCCAAAGAAAGGGGAAACTTCAAGAGTAGATGGCATTTTGAAGATCCTTCCATGCCCAAAGAAGAAAGAGGCAGCTGCCTCCAAGAGGGACTCAGAGCAGTCCAAAGACAAGAAAGCACCATTGTCTTGGCTGACCCCTGCTCCTTCAAAGAAGACTGCTTCTGTTGTGTCTAAAATAGATTTGCTAGGGGAGTTTCAGAGTGCCCTTCCAAAGACTAAGAGCACCCAGAAGAAGGGCTCCAAGAAGAAGTCCTTGAAAAAGAAAATTGCTACAGAGAACTCCACCCAAGCTCAGTCAAAGGATAAAGGCTCCAAGAAGAAGCCCTTGAAGAAAAATGCTGTACCGAACTCCACCCAAGCTCGTTCTGAAGATAAGTGCCCTACAGTCCCCCAAAACTTGCCAGGGAAGATGGTGGCAATAGACTGTGAAATGGTGGGCACAGGACCCAAGGGACGCGTTAGTTCCCTGGCTCGATGCAGCATTGTAAATTACAATGGTGATGTGCTGTACGATGAGTACGTCCTCCCCCCCTGCTACATCGTCAACTACCGGACCAGATGGAGTGGCATCCGGAAGTGCCACATGGTTAACGCTACACCCTTTAAGACTGCTCGGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048039-Isg20l2:NM_177663:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.553
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0092919=RNase_T=PU(44.2=26.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGGACGCTTGCGATCTTAG
R:
CACCTTGTTAGGGGGTTGGTT
Band lengths:
342-1061
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: