BtaALTA0015102-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000001518 | ISG20L2
Description
Bos taurus interferon stimulated exonuclease gene 20kDa-like 2 (ISG20L2), mRNA. [Source:RefSeq mRNA;Acc:NM_001046217]
Coordinates
chr3:14154160-14155628:+
Coord C1 exon
chr3:14154160-14154183
Coord A exon
NA
Coord C2 exon
chr3:14154887-14155628
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
ACTGTTCTCTCACCATCCAGTGT
3' ss Score
8.35
Exon sequences
Seq C1 exon
GGTCTTAGCGGGTCCATCTAGGAG
Seq A exon
NA
Seq C2 exon
TGTCATCATGTCTACCTTACTCCTCAATCTGGATTTTGGCGAGCCTCCCCCCAAAAAGGCATTAGAGGGAAATGCCAAGCACCGAAAATTTGTCAAGAAGAGGCGACTGTTGGAACGGAAAGGCTTCCTCAATAAGAAGAAGCAGCCCCCTAGCAAGGTGCCTAAGTTGCACTCAGAACCTTCACAGAAAGGGGAAACTCCCAGGGTAGATGGCACTTGGAAGGCCACTCCCCTTCCAAAGAAGAAGACAACAGCTGCCTCCAGCAGTGGGTCAGAGCAGTCCCTGGACAAGAAAGCTGCAGTGCCTTGGCTGACTCCTGCCCCTTCACAGAAGGCTGGTTCTGTTGTGGCTAAAGTAGATTTGCTGGGGGAGTTCCAGAGCGCCCTACCAAAGATTAAGAGCCACCCAACTCGCCCCCAGAAGAAGGGATCCCAGAAGAATCCTCCACCCAAGAATGGCCCACAGAACTCCACCCATACACATTCAGAGAATAAATACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001518-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.624
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0092919=RNase_T=PU(44.2=28.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTAGCGGGTCCATCTAGGA
R:
GCCTTCCAAGTGCCATCTACC
Band lengths:
248-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development