HsaALTD0003394-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000157551 | KCNJ15
Description
potassium inwardly-rectifying channel, subfamily J, member 15 [Source:HGNC Symbol;Acc:6261]
Coordinates
chr21:39629026-39668945:+
Coord C1 exon
chr21:39629026-39629107
Coord A exon
chr21:39629108-39629187
Coord C2 exon
chr21:39668848-39668945
Length
80 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TGTGTCCCTCTTTCTTTCAGGCA
3' ss Score
12.19
Exon sequences
Seq C1 exon
GCAACCTGTCTGGACTGAGCATTTCTCTGACTTGACATAACTTCCCATCCAGCCAGGAGTCTGCACTCTTCAGTCTTTGCAG
Seq A exon
GTAAGAGGTACACGGCGCTTATGTTAACTCTGGGGCATGTGGCACGCTGGAGGTATTTTTGAAAAACTTTACTTCTAAAG
Seq C2 exon
GCAGTAGCAGAATCCCATGGTAGCCAGGTGGGTGAAGGGGAGCGAGGACGTTCTACCTGCCTTGAAGAAGACACCTGACCTGCGGAGTGAGTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157551-1-14,2-14-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCTGTCTGGACTGAGCAT
R:
CTGGTCACTCACTCCGCAG
Band lengths:
179-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)