MmuALTD0007333-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000062609 | Kcnj15
Description
potassium inwardly-rectifying channel, subfamily J, member 15 [Source:MGI Symbol;Acc:MGI:1310000]
Coordinates
chr16:95258351-95291896:+
Coord C1 exon
chr16:95258351-95258374
Coord A exon
chr16:95258375-95258451
Coord C2 exon
chr16:95291811-95291896
Length
77 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TCTGTTCCTCTTTCTTTCAGGCC
3' ss Score
12.4
Exon sequences
Seq C1 exon
GAGCCTGCACTGGGCACTCGGCAG
Seq A exon
GTAAGAAGCTGAAGTGTCTGTCACTGTGGGGGCACGCAGCATGCTGGAGATGCTTCTGAGAAACTTGACTTCCAAAG
Seq C2 exon
GCCATAGCAGAGCCCCATGGTAGCCAGGTGGGAGAAGGGGAGCGAGGACGCGCCACTTACCCTGCAGAAGATTCCTGACCTACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062609-1-12,2-12-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.107
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types