MmuEX0025068 @ mm10
Exon Skipping
Gene
ENSMUSG00000062609 | Kcnj15
Description
potassium inwardly-rectifying channel, subfamily J, member 15 [Source:MGI Symbol;Acc:MGI:1310000]
Coordinates
chr16:95258202-95300211:+
Coord C1 exon
chr16:95258202-95258374
Coord A exon
chr16:95291811-95291908
Coord C2 exon
chr16:95295591-95300211
Length
98 bp
Sequences
Splice sites
3' ss Seq
TCTGTTCCTCTTTCTTTCAGGCC
3' ss Score
12.4
5' ss Seq
CAGGTAGTA
5' ss Score
5.89
Exon sequences
Seq C1 exon
GTAATTCCTCTCAGAAACTTGTACGAACTTGTTTTTGACTGACAGTGAACAGTAAGACTGGTTCTTCACTTTGAAGAACCCTCAGCACCTACCTTTGCAAGGCACCCTGGATCACTTCCTTGCCTGGTCTTAATTTCCCACCCACCCAGGAGCCTGCACTGGGCACTCGGCAG
Seq A exon
GCCATAGCAGAGCCCCATGGTAGCCAGGTGGGAGAAGGGGAGCGAGGACGCGCCACTTACCCTGCAGAAGATTCCTGACCTACAGAGTGAGTGACCAG
Seq C2 exon
GTGGTCCAAAGATGGATGCCATTCACCTTGGCATGTCCAGTGCCCCACTGGTGAAGCATACCAACGGGGTTGGACTCAAGGCCCACAGACCCCGAGTCATGTCAAAGAGTGGGCACAGTAATGTGAGAATCGATAAGGTAGACGGAATCTATTTACTCTACCTCCAGGACTTGTGGACAACCGTCATCGACATGAAGTGGCGATACAAGCTCACCCTATTTGCTGCCACCTTTGTGATGACCTGGTTTCTGTTTGGAGTGGTCTACTATGCCATAGCCTTTATTCATGGTGACTTACAACTTGGGGAATCTAATTCCAACCACACACCCTGCATTATGAAAGTGGACTCTCTCACAGGAGCATTCCTCTTTTCCTTGGAATCTCAGACAACCATTGGCTACGGGGTCCGTTCCATCACAGAGGAGTGTCCCCATGCTATCTTCCTCTTAGTCGCCCAACTGGTCATCACCACATTGATTGAGATCTTCATTACGGGGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062609_MULTIEX1-4/4=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.107 C2=0.017
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0100715=IRK=WD(100=88.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCTGGATCACTTCCTTGC
R:
TTGACATGACTCGGGGTCTGT
Band lengths:
176-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types