RnoEX0046079 @ rn6
Exon Skipping
Gene
ENSRNOG00000001656 | Kcnj15
Description
potassium voltage-gated channel subfamily J member 15 [Source:RGD Symbol;Acc:621662]
Coordinates
chr11:35545586-35585390:+
Coord C1 exon
chr11:35545586-35545759
Coord A exon
chr11:35580277-35580374
Coord C2 exon
chr11:35584094-35585390
Length
98 bp
Sequences
Splice sites
3' ss Seq
TCTGTCCCTCTTTCTTTCAGGCC
3' ss Score
12.63
5' ss Seq
CAGGTAGTA
5' ss Score
5.89
Exon sequences
Seq C1 exon
GTAATTCCTCTCAGAAACTTGTACGAACTTGTTTTTTGACTGACAGTGAACACCAAGAGTGCTTCTTCGCTTCGAAAAGCCCTCAGCACCTACCTTTCCAAGGCACCCCGGATCACTTCCTTGCCTGGTCTTAATTTCCCGCCCACCCAGGAGTCCGCATTGGGCACTCTGCAG
Seq A exon
GCCATAGCACAGCCCCATGGTAGCCAGGTGGGTGAAGGGGAGCGAGGACGCGCCACTTGCCCTGCAGAAGATTCCTGACCTACAGAGTGAGTGACCAG
Seq C2 exon
GTGGTCCAAGGAGCCTGAGGATGGAGGCCATTCACATTGGCATGTCCAGTGCCCCACTGGTGAAGCACAGCAATGGGGTTGGACTCAAAGCCCACAGGCCCCGAGTCATGTCGAAGAGTGGACACAGCAATGTGAGAATTGACAAGGTAGACGGTATCTATTTGCTCTACCTCCAGGACTTGTGGACGACAGTCATCGACATGAAGTGGAGATATAAGCTCACCCTGTTTGCTGCCACCTTTGTGATGACCTGGTTTCTTTTTGGGGTGGTCTACTATGCCATAGCTTTTATTCATGGCGATTTAGAACTCGGGGAATCTAATTCTAACCACACGCCCTGCATTATGAAAGTGGATTCCCTCACAGGGGCATTCCTCTTTTCCTTGGAGTCTCAGACAACCATTGGCTATGGGGTCCGTTCCATCACAGAGGAGTGTCCCCACGCTATCTTCCTCTTGGTTGCCCAACTGGTCATCACCACCTTGATTGAAATCTTCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001656_MULTIEX1-2/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.056 C2=0.013
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0100715=IRK=WD(100=87.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGTCTTAATTTCCCGCCC
R:
TTGCTGTGTCCACTCTTCGAC
Band lengths:
181-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]