RnoALTD0015140-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000001656 | Kcnj15
Description
potassium voltage-gated channel subfamily J member 15 [Source:RGD Symbol;Acc:621662]
Coordinates
chr11:35580277-35585390:+
Coord C1 exon
chr11:35580277-35580362
Coord A exon
chr11:35580363-35580374
Coord C2 exon
chr11:35584094-35585390
Length
12 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTA
5' ss Score
5.89
3' ss Seq
TTTCTTTGTTATTTCTTTAGGTG
3' ss Score
11.13
Exon sequences
Seq C1 exon
GCCATAGCACAGCCCCATGGTAGCCAGGTGGGTGAAGGGGAGCGAGGACGCGCCACTTGCCCTGCAGAAGATTCCTGACCTACAGA
Seq A exon
GTGAGTGACCAG
Seq C2 exon
GTGGTCCAAGGAGCCTGAGGATGGAGGCCATTCACATTGGCATGTCCAGTGCCCCACTGGTGAAGCACAGCAATGGGGTTGGACTCAAAGCCCACAGGCCCCGAGTCATGTCGAAGAGTGGACACAGCAATGTGAGAATTGACAAGGTAGACGGTATCTATTTGCTCTACCTCCAGGACTTGTGGACGACAGTCATCGACATGAAGTGGAGATATAAGCTCACCCTGTTTGCTGCCACCTTTGTGATGACCTGGTTTCTTTTTGGGGTGGTCTACTATGCCATAGCTTTTATTCATGGCGATTTAGAACTCGGGGAATCTAATTCTAACCACACGCCCTGCATTATGAAAGTGGATTCCCTCACAGGGGCATTCCTCTTTTCCTTGGAGTCTCAGACAACCATTGGCTATGGGGTCCGTTCCATCACAGAGGAGTGTCCCCACGCTATCTTCCTCTTGGTTGCCCAACTGGTCATCACCACCTTGATTGAAATCTTCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001656-8-7,9-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.013
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0100715=IRK=WD(100=87.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGCAGAAGATTCCTGAC
R:
ATTGCTGTGCTTCACCAGTGG
Band lengths:
102-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]