BtaALTD0011361-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000000973 | KCNJ15
Description
Bos taurus potassium inwardly-rectifying channel, subfamily J, member 15 (KCNJ15), mRNA. [Source:RefSeq mRNA;Acc:NM_001099018]
Coordinates
chr1:152301743-152306134:+
Coord C1 exon
chr1:152301743-152301835
Coord A exon
chr1:152301836-152301847
Coord C2 exon
chr1:152304312-152306134
Length
12 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
3' ss Seq
TTCCTTTGTCCTTTCCTTAGGTG
3' ss Score
11.43
Exon sequences
Seq C1 exon
GAAGTAGCAGAGTCCCATGGTAGCCAGGTGGGCGAAGGGGAGTGAGGACCATCCACCTGCCTTGGAGAAGACACCATCTGACCCGCCTGCCGA
Seq A exon
GTGAGCCCCCAG
Seq C2 exon
GTGGCCCTGTGAGCTGGTCTATGGACCCGATTCACATCAGCATGGCCAGCGCGCCCCTGGTGAAGCACACTGCTGGTGCTGGCCTCAAGGCCAGCAGACCCCGAGTCATGTCCAAGAGCGGGCACAGCAACGTGAGAATTGACAAAGTGGATGGCATATATTTGCTCTACCTCCAAGACTTGTGGACTACCGTCATCGACATGAAGTGGAGATATAAGCTCACCCTGTTTGCTGCCACGTTCGTGATGACCTGGTTCCTGTTCGGGGTGATCTACTATGCCATCGCCTTTATCCATGGGGACCTGGAGCCCAGTGAGCCTCCTTCCAATCACACCCCATGCATCATGAGAGTGGACTCCCTCACTGGGGCGTTTCTGTTTTCCCTGGAATCCCAGACGACCATCGGCTACGGAGTCCGTTCTATCACCGAGGAATGTCCTCATGCCATCTTCCTCTTGGTGGCCCAGCTGGTCATCACCACCTTGATTGAGATCTTCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000973-7-7,8-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0100715=IRK=WD(100=89.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCACCTGCCTTGGAGAAG
R:
TGGCCATGCTGATGTGAATCG
Band lengths:
92-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development