HsaALTD0003395-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000157551 | KCNJ15
Description
potassium voltage-gated channel subfamily J member 15 [Source:HGNC Symbol;Acc:HGNC:6261]
Coordinates
chr21:38296926-38299337:+
Coord C1 exon
chr21:38296926-38297011
Coord A exon
chr21:38297012-38297023
Coord C2 exon
chr21:38299244-38299337
Length
12 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTA
5' ss Score
5.89
3' ss Seq
ATCTTTGTCATTTCTCTAAGTGT
3' ss Score
6.08
Exon sequences
Seq C1 exon
GCAGTAGCAGAATCCCATGGTAGCCAGGTGGGTGAAGGGGAGCGAGGACGTTCTACCTGCCTTGAAGAAGACACCTGACCTGCGGA
Seq A exon
GTGAGTGACCAG
Seq C2 exon
TGTTTCCAGAGCCTGGCAATGGATGCCATTCACATCGGCATGTCCAGCACCCCCCTGGTGAAGCACACTGCTGGGGCTGGGCTCAAGGCCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157551-27-25,28-25-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0100715=IRK=WD(100=89.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCGAGGACGTTCTACCT
R:
TGGACATGCCGATGTGAATGG
Band lengths:
94-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development