Special

MmuALTD0007334-2/2 @ mm9

Alternative 5'ss

Gene
ENSMUSG00000062609 | Kcnj15
Description
potassium inwardly-rectifying channel, subfamily J, member 15 [Source:MGI Symbol;Acc:MGI:1310000]
Coordinates
chr16:95513418-95521230:+
Coord C1 exon
chr16:95513418-95513503
Coord A exon
chr16:95513504-95513515
Coord C2 exon
chr16:95517198-95521230
Length
12 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTA
5' ss Score
5.89
3' ss Seq
TTCTTTTGTTATTTCTTTAGGTG
3' ss Score
10.85
Exon sequences
Seq C1 exon
GCCATAGCAGAGCCCCATGGTAGCCAGGTGGGAGAAGGGGAGCGAGGACGCGCCACTTACCCTGCAGAAGATTCCTGACCTACAGA
Seq A exon
GTGAGTGACCAG
Seq C2 exon
GTGGTCCAAAGATGGATGCCATTCACCTTGGCATGTCCAGTGCCCCACTGGTGAAGCATACCAACGGGGTTGGACTCAAGGCCCACAGACCCCGAGTCATGTCAAAGAGTGGGCACAGTAATGTGAGAATCGATAAGGTAGACGGAATCTATTTACTCTACCTCCAGGACTTGTGGACAACCGTCATCGACATGAAGTGGCGATACAAGCTCACCCTATTTGCTGCCACCTTTGTGATGACCTGGTTTCTGTTTGGAGTGGTCTACTATGCCATAGCCTTTATTCATGGTGACTTACAACTTGGGGAATCTAATTCCAACCACACACCCTGCATTATGAAAGTGGACTCTCTCACAGGAGCATTCCTCTTTTCCTTGGAATCTCAGACAACCATTGGCTACGGGGTCCGTTCCATCACAGAGGAGTGTCCCCATGCTATCTTCCTCTTAGTCGCCCAACTGGTCATCACCACATTGATTGAGATCTTCATTACGGGGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062609-9-11,11-11-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (No Ref, Alt. Stop)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.107 A=NA C2=0.022
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
PF0100715=IRK=WD(100=88.4)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000045218





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000045218f5243A, ENSMUSP00000109489, ENSMUSP00000109490, ENSMUSP00000109492, ENSMUSP00000109493, ENSMUSP00000114449, ENSMUSP00000117744, ENSMUSP00000118992
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
chr21:38297024-38297025 
HIGH PSI
HsaALTD0003395-2/2
(KCNJ15)
Human
(hg19)
chr21:39668848-39668945 
HIGH PSI
HsaALTD0003395-2/2
(KCNJ15)
Rat
(rn6)
chr11:35580277-35580374 
ALTERNATIVE
RnoALTD0015140-2/2
(Kcnj15)
Cow
(bosTau6)
chr1:152301743-152301847 
HIGH PSI
BtaALTD0011361-2/2
(KCNJ15)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CCCTGCAGAAGATTCCTGACC

				
R: 
CCCGTTGGTATGCTTCACCAG

				
Band lengths: 
95-107

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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