RnoEX0046077 @ rn6
Exon Skipping
Gene
ENSRNOG00000001656 | Kcnj15
Description
potassium voltage-gated channel subfamily J member 15 [Source:RGD Symbol;Acc:621662]
Coordinates
chr11:35580277-35585390:+
Coord C1 exon
chr11:35580277-35580374
Coord A exon
chr11:35581529-35581686
Coord C2 exon
chr11:35584094-35585390
Length
158 bp
Sequences
Splice sites
3' ss Seq
CCAACGTTATCTTTTCCAAGGAC
3' ss Score
5.04
5' ss Seq
TCGGTAGGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GCCATAGCACAGCCCCATGGTAGCCAGGTGGGTGAAGGGGAGCGAGGACGCGCCACTTGCCCTGCAGAAGATTCCTGACCTACAGAGTGAGTGACCAG
Seq A exon
GACTGGAGGAGTCATCAGTCTCGTCAGCATCAGCAGGCAGGGGCTATAAGATGCTCTGCAGCCTTGGGGCCAGCTCCTCCCCAGCTGCTGGCTCTCCAGGCAGGGCAAAGCACTCCCCACTCCCCGAGGCTGAGCGGGGAGCCCAGAGCTACTTCTCG
Seq C2 exon
GTGGTCCAAGGAGCCTGAGGATGGAGGCCATTCACATTGGCATGTCCAGTGCCCCACTGGTGAAGCACAGCAATGGGGTTGGACTCAAAGCCCACAGGCCCCGAGTCATGTCGAAGAGTGGACACAGCAATGTGAGAATTGACAAGGTAGACGGTATCTATTTGCTCTACCTCCAGGACTTGTGGACGACAGTCATCGACATGAAGTGGAGATATAAGCTCACCCTGTTTGCTGCCACCTTTGTGATGACCTGGTTTCTTTTTGGGGTGGTCTACTATGCCATAGCTTTTATTCATGGCGATTTAGAACTCGGGGAATCTAATTCTAACCACACGCCCTGCATTATGAAAGTGGATTCCCTCACAGGGGCATTCCTCTTTTCCTTGGAGTCTCAGACAACCATTGGCTATGGGGTCCGTTCCATCACAGAGGAGTGTCCCCACGCTATCTTCCTCTTGGTTGCCCAACTGGTCATCACCACCTTGATTGAAATCTTCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001656-'9-7,'9-6,10-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.434 C2=0.013
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0100715=IRK=WD(100=87.7)
Main Inclusion Isoform:
ENSRNOT00000002259fB7196
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTTGCCCTGCAGAAGATT
R:
TGTCGATGACTGTCGTCCACA
Band lengths:
247-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]