MmuEX0025066 @ mm10
Exon Skipping
Gene
ENSMUSG00000062609 | Kcnj15
Description
potassium inwardly-rectifying channel, subfamily J, member 15 [Source:MGI Symbol;Acc:MGI:1310000]
Coordinates
chr16:95291811-95300211:+
Coord C1 exon
chr16:95291811-95291908
Coord A exon
chr16:95293036-95293181
Coord C2 exon
chr16:95295591-95300211
Length
146 bp
Sequences
Splice sites
3' ss Seq
CCAACGTTATCTTTTCCGAGGAA
3' ss Score
0.23
5' ss Seq
TCGGTAGGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GCCATAGCAGAGCCCCATGGTAGCCAGGTGGGAGAAGGGGAGCGAGGACGCGCCACTTACCCTGCAGAAGATTCCTGACCTACAGAGTGAGTGACCAG
Seq A exon
GAATGTCGGAGTCATCAGTTTCCGTCAGCAGGCAGGTGCTATAAGATGCTCTGGGGCCTTGAGGCCAGCTCTTCCCTGGCTGCTGGCTGCCGAGGCAGGGCAAAGTGCTCCCTGGGGCTGAGCGGGGAGCCTAGAGCTACTTCTCG
Seq C2 exon
GTGGTCCAAAGATGGATGCCATTCACCTTGGCATGTCCAGTGCCCCACTGGTGAAGCATACCAACGGGGTTGGACTCAAGGCCCACAGACCCCGAGTCATGTCAAAGAGTGGGCACAGTAATGTGAGAATCGATAAGGTAGACGGAATCTATTTACTCTACCTCCAGGACTTGTGGACAACCGTCATCGACATGAAGTGGCGATACAAGCTCACCCTATTTGCTGCCACCTTTGTGATGACCTGGTTTCTGTTTGGAGTGGTCTACTATGCCATAGCCTTTATTCATGGTGACTTACAACTTGGGGAATCTAATTCCAACCACACACCCTGCATTATGAAAGTGGACTCTCTCACAGGAGCATTCCTCTTTTCCTTGGAATCTCAGACAACCATTGGCTACGGGGTCCGTTCCATCACAGAGGAGTGTCCCCATGCTATCTTCCTCTTAGTCGCCCAACTGGTCATCACCACATTGATTGAGATCTTCATTACGGGGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062609-'16-14,'16-13,17-14
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=0.107 A=NA C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0100715=IRK=WD(100=88.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCAGAAGATTCCTGACC
R:
TCGCCACTTCATGTCGATGAC
Band lengths:
242-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types