BtaEX6004353 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000973 | KCNJ15
Description
Bos taurus potassium inwardly-rectifying channel, subfamily J, member 15 (KCNJ15), mRNA. [Source:RefSeq mRNA;Acc:NM_001099018]
Coordinates
chr1:152301468-152306134:+
Coord C1 exon
chr1:152301468-152301492
Coord A exon
chr1:152301743-152301847
Coord C2 exon
chr1:152304312-152306134
Length
105 bp
Sequences
Splice sites
3' ss Seq
CGTGGCCCTCTTTCTTTCAGGAA
3' ss Score
12.64
5' ss Seq
CAGGTAGCA
5' ss Score
6.37
Exon sequences
Seq C1 exon
CAGTTGATAGTGGGCTTCTGTGGGG
Seq A exon
GAAGTAGCAGAGTCCCATGGTAGCCAGGTGGGCGAAGGGGAGTGAGGACCATCCACCTGCCTTGGAGAAGACACCATCTGACCCGCCTGCCGAGTGAGCCCCCAG
Seq C2 exon
GTGGCCCTGTGAGCTGGTCTATGGACCCGATTCACATCAGCATGGCCAGCGCGCCCCTGGTGAAGCACACTGCTGGTGCTGGCCTCAAGGCCAGCAGACCCCGAGTCATGTCCAAGAGCGGGCACAGCAACGTGAGAATTGACAAAGTGGATGGCATATATTTGCTCTACCTCCAAGACTTGTGGACTACCGTCATCGACATGAAGTGGAGATATAAGCTCACCCTGTTTGCTGCCACGTTCGTGATGACCTGGTTCCTGTTCGGGGTGATCTACTATGCCATCGCCTTTATCCATGGGGACCTGGAGCCCAGTGAGCCTCCTTCCAATCACACCCCATGCATCATGAGAGTGGACTCCCTCACTGGGGCGTTTCTGTTTTCCCTGGAATCCCAGACGACCATCGGCTACGGAGTCCGTTCTATCACCGAGGAATGTCCTCATGCCATCTTCCTCTTGGTGGCCCAGCTGGTCATCACCACCTTGATTGAGATCTTCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000973-'6-7,'6-3,8-7=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0100715=IRK=WD(100=89.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATAGTGGGCTTCTGTGGGG
R:
GCAGCAAACAGGGTGAGCTTA
Band lengths:
256-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]