HsaEX6006146 @ hg38
Exon Skipping
Gene
ENSG00000157551 | KCNJ15
Description
potassium voltage-gated channel subfamily J member 15 [Source:HGNC Symbol;Acc:HGNC:6261]
Coordinates
chr21:38257046-38299337:+
Coord C1 exon
chr21:38257046-38257185
Coord A exon
chr21:38296926-38297023
Coord C2 exon
chr21:38299244-38299337
Length
98 bp
Sequences
Splice sites
3' ss Seq
TGTGTCCCTCTTTCTTTCAGGCA
3' ss Score
12.19
5' ss Seq
CAGGTAGTA
5' ss Score
5.89
Exon sequences
Seq C1 exon
TGAACAGTGAGAGAGTTTTCTTCATTTTGAGGAACCCTAAACACCTATCTTTCCCAAGGCAACCTGTCTGGACTGAGCATTTCTCTGACTTGACATAACTTCCCATCCAGCCAGGAGTCTGCACTCTTCAGTCTTTGCAG
Seq A exon
GCAGTAGCAGAATCCCATGGTAGCCAGGTGGGTGAAGGGGAGCGAGGACGTTCTACCTGCCTTGAAGAAGACACCTGACCTGCGGAGTGAGTGACCAG
Seq C2 exon
TGTTTCCAGAGCCTGGCAATGGATGCCATTCACATCGGCATGTCCAGCACCCCCCTGGTGAAGCACACTGCTGGGGCTGGGCTCAAGGCCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157551-'13-25,'13-23,28-25
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0100715=IRK=WD(100=89.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGCAACCTGTCTGGACTG
R:
CCTTGAGCCCAGCCCCAG
Band lengths:
174-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains