RnoEX0046078 @ rn6
Exon Skipping
Gene
ENSRNOG00000001656 | Kcnj15
Description
potassium voltage-gated channel subfamily J member 15 [Source:RGD Symbol;Acc:621662]
Coordinates
chr11:35545586-35580362:+
Coord C1 exon
chr11:35545586-35545759
Coord A exon
chr11:35555056-35555217
Coord C2 exon
chr11:35580277-35580362
Length
162 bp
Sequences
Splice sites
3' ss Seq
CATGTTAATTCCTTCATAAGATC
3' ss Score
3.26
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GTAATTCCTCTCAGAAACTTGTACGAACTTGTTTTTTGACTGACAGTGAACACCAAGAGTGCTTCTTCGCTTCGAAAAGCCCTCAGCACCTACCTTTCCAAGGCACCCCGGATCACTTCCTTGCCTGGTCTTAATTTCCCGCCCACCCAGGAGTCCGCATTGGGCACTCTGCAG
Seq A exon
ATCAGCGACCTTTGAACACAGACAGGACCTGAACGTTCACAATGCAGAGGCAATGAGAACAGGAGCTTCATGCCAATTCCCCGGGGCCACGGACTTTCTCATAGCTTCCAGTTCCTGTTGGCGGGTCTGCCTTCTGGATTCTCAGTACTCGGGTGTAGCAAG
Seq C2 exon
GCCATAGCACAGCCCCATGGTAGCCAGGTGGGTGAAGGGGAGCGAGGACGCGCCACTTGCCCTGCAGAAGATTCCTGACCTACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001656_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.056
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCTCAGAAACTTGTACGAACT
R:
GTCAGGAATCTTCTGCAGGGC
Band lengths:
248-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]