HsaALTD0003792-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000015479 | MATR3
Description
matrin 3 [Source:HGNC Symbol;Acc:6912]
Coordinates
chr5:138629672-138650425:+
Coord C1 exon
chr5:138629672-138629717
Coord A exon
NA
Coord C2 exon
chr5:138650364-138650425
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
ACTAATTTACTTTGCTGCAGGAG
3' ss Score
7.23
Exon sequences
Seq C1 exon
GTTAGGAGCGCAGTGGCGGCGCAACCAGCCTTCTAGGGCGGCGGAG
Seq A exon
NA
Seq C2 exon
GAGTGGAGTCAACATATCAATGGAGCAAGTCACAGTCGTCGATGCCAGCTTCTTCTTGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000015479-22-38,23-38-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.778 A=NA C2=0.311
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCAACCAGCCTTCTAGG
R:
TCAAGAAGAAGCTGGCATCGAC
Band lengths:
87-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)