MmuALTD0008250-2/4 @ mm10
Alternative 5'ss
Gene
NA
Description
NA
Coordinates
chr18:35559343-35577619:+
Coord C1 exon
chr18:35559343-35562307
Coord A exon
chr18:35562308-35562521
Coord C2 exon
chr18:35577558-35577619
Length
214 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
ACTAATTTACTTTGCTGCAGGAG
3' ss Score
7.23
Exon sequences
Seq C1 exon
TAGGCGCGAGAACAAACAACTAAAACTTTAGTTTCTTCTGGCACGTTTCTTTCTCCCGTGTCAATAATAAATAACCTCCCCATTCCTCGCCCGTTAAGTCGGAGAATCTATAGAGTCCCGCCTAGCGCTGCTAACTCATAATTTGCAGCCTTATGTAGATGTTGAGATGCAAAGCATCTTTTAGAGAGGTACAGGAACGGGTCGGTGCCGTTTTCCCGCCTTCGCCTGAAGGGGGATCCTTCCTGGGCCTGGGAGAACAACGCTGGCCGGCCGCGTACGTCACGTGCCTACCCCGCGCGGGGGGAGGGGCTTGGCGCGTGCCGAACTAGAACTGGGGCGGGGGTGGGAACGGGCGCTCTCGCGAGATTCATCTCTGGTTCTGTCGCCACCTCCTGCCAGCGCCGTTGCTGCGGGGGATTGTGGGAGCCTCCGCGTCCCGCTCGCTGAGAGAGGTATCTCTCCTTTTCCCTCTCCCTTCCCCTCAGGTAGGCGTGAAGCGG
Seq A exon
GTAAGAGTCCGGGCGGGTGGCCGGGGGACTCCCTGCGTCTGTTCAGAGCGGGACGGCCGCCTTGGCGGAGGCTGTAGGGAGCTGGCACGCTGCTGCCGCGCTCTCGGGCTCGCCCGCTCTGCCTCCTCGGTCGCTGCGTATGTGAGGCGCCCGAGCGGCGGCCGCCATGTTAGGAGTGCAGTGGCGGCGCAGCCTGCCTCCTCGGGCGGCGGAG
Seq C2 exon
GAGTGGAGTCAACATATCAATGGAGCAAGTCACAGTCGTCGATGCCAGCTTCTTCTTGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000099703-15-7,16-7,18-7,19-7-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCTGGGCCTGGGAGAA
R:
CATCGACGACTGTGACTTGCT
Band lengths:
306-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types