HsaALTD0003888-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000166482 | MFAP4
Description
microfibrillar-associated protein 4 [Source:HGNC Symbol;Acc:7035]
Coordinates
chr17:19290073-19290563:-
Coord C1 exon
chr17:19290463-19290563
Coord A exon
NA
Coord C2 exon
chr17:19290073-19290151
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
CCCTGTCTGCCCATCGCCAGGCA
3' ss Score
6.99
Exon sequences
Seq C1 exon
GGGGCTGGGGCGGCTGGCGGGGGCCCAGCGCATAACTCTGGGCGGTTGCAGTCTGGGGCCGCAGACACCCAGCCACTCTGAGCAGAACTGACAGCATGAAG
Seq A exon
NA
Seq C2 exon
GCACTCCTGGCCCTGCCGCTGCTGCTGCTTCTCTCCACGCCCCCGTGTGCCCCCCAGGTCTCCGGGATCCGAGGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166482-0-1,1-1-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGCGCATAACTCTGG
R:
CGGATCCCGGAGACCTGG
Band lengths:
150-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)