HsaALTD0003888-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000166482 | MFAP4
Description
microfibrillar-associated protein 4 [Source:HGNC Symbol;Acc:7035]
Coordinates
chr17:19290073-19290563:-
Coord C1 exon
chr17:19290463-19290563
Coord A exon
chr17:19290354-19290462
Coord C2 exon
chr17:19290073-19290151
Length
109 bp
Sequences
Splice sites
5' ss Seq
CTCGTAAGC
5' ss Score
5.08
3' ss Seq
CCCTGTCTGCCCATCGCCAGGCA
3' ss Score
6.99
Exon sequences
Seq C1 exon
GGGGCTGGGGCGGCTGGCGGGGGCCCAGCGCATAACTCTGGGCGGTTGCAGTCTGGGGCCGCAGACACCCAGCCACTCTGAGCAGAACTGACAGCATGAAG
Seq A exon
GTACGGGGCCCAGGGTCGGGGGACTCATAGCATGGGGGAACTGAGCCCACTCCAGAGGCCCCTGGCCACAGAGGGCACTATGAAGGCACAAGGAGTTCTCTTGAAACTC
Seq C2 exon
GCACTCCTGGCCCTGCCGCTGCTGCTGCTTCTCTCCACGCCCCCGTGTGCCCCCCAGGTCTCCGGGATCCGAGGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166482-0-1,1-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGCGCATAACTCTGG
R:
CGGATCCCGGAGACCTGG
Band lengths:
150-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)