HsaALTD0003950-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000078403 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 [Source:HGNC Symbol;Acc:16063]
Coordinates
chr10:21823323-21823733:+
Coord C1 exon
chr10:21823323-21823423
Coord A exon
NA
Coord C2 exon
chr10:21823574-21823733
Length
0 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGT
5' ss Score
9.54
3' ss Seq
TCCCCCCAACTCCCTCTTAGATG
3' ss Score
7.16
Exon sequences
Seq C1 exon
TGGGGAGGGAAGACGCTGAGGAGGAGGAGGAGGCGGAGGAGGCGGTGGAGGGGAGGTGGGGGGAATCAGCAAGGACATGGCTCCTGACTCCTGTGCGGAAC
Seq A exon
NA
Seq C2 exon
ATGGTCTCTAGCGACCGGCCCGTGTCACTGGAGGACGAGGTCTCCCATAGTATGAAGGAGATGATTGGAGGCTGTTGCGTTTGCTCAGACGAGAGAGGCTGGGCCGAGAACCCGCTGGTTTATTGCGACGGGCACGGCTGCAGCGTCGCGGTGCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078403-1-0,2-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.047
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF138311=PHD_2=PU(48.6=33.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAATCAGCAAGGACATGG
R:
CGCAACAGCCTCCAATCATCT
Band lengths:
121-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)