HsaALTD0004029-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000055950 | MRPL43
Description
mitochondrial ribosomal protein L43 [Source:HGNC Symbol;Acc:14517]
Coordinates
chr10:102743512-102746576:-
Coord C1 exon
chr10:102746506-102746576
Coord A exon
NA
Coord C2 exon
chr10:102743512-102743574
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAA
5' ss Score
2.83
3' ss Seq
ACCCTCATCTTCCTCTCCAGGAC
3' ss Score
11.62
Exon sequences
Seq C1 exon
CCTTCACCAACAAGCCGACCACGTTCCGCGGGCTACGCCCCCGAGAGGTTCAGGATCCTGCCCCAGCCCAG
Seq A exon
NA
Seq C2 exon
GACACTGGCCTGAGACTGTCTGCAGTTGCACCGCAGATCCTCCTGCCCGGCTGGCCCGACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000055950-4-8,5-8-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.334 A=NA C2=0.203
Domain overlap (PFAM):
C1:
PF0504711=L51_S25_CI-B8=PD(29.6=21.1)
A:
NA
C2:
NO
Other Inclusion Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCACCAACAAGCCGACC
R:
CAGCCGGGCAGGAGGATC
Band lengths:
124-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)