HsaINT0105182 @ hg19
Intron Retention
Gene
ENSG00000055950 | MRPL43
Description
mitochondrial ribosomal protein L43 [Source:HGNC Symbol;Acc:14517]
Coordinates
chr10:102743512-102743831:-
Coord C1 exon
chr10:102743705-102743831
Coord A exon
chr10:102743575-102743704
Coord C2 exon
chr10:102743512-102743574
Length
130 bp
Sequences
Splice sites
5' ss Seq
TTGGTCAGC
5' ss Score
2.52
3' ss Seq
ACCCTCATCTTCCTCTCCAGGAC
3' ss Score
11.62
Exon sequences
Seq C1 exon
GATGCGGCTGAGTTCCTCGGCGAAGGAGCAGGGCCCTGCTGGTACTCCATTGTTGCTCTGCCTCAGAAGCACATAGCTATTGCCATTCATCCTCCGCAGCCGGCTGGGCAGTGCCACCAAGCCATTG
Seq A exon
GTCAGCTCAGCCGGTGGCGGTGGGGGCGGTGGGGGTGGTGGGGCTGGGGCTCCCTCCCCAGGGATGATCTGGAGACAGCTGCCCTCCAGGCCCCCAGCCCCCTCATCATCACCCTCATCTTCCTCTCCAG
Seq C2 exon
GACACTGGCCTGAGACTGTCTGCAGTTGCACCGCAGATCCTCCTGCCCGGCTGGCCCGACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000055950-MRPL43:NM_176794:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.132 A=NA C2=0.203
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCGGCTGAGTTCCTCG
R:
GCCGGGCAGGAGGATCTG
Band lengths:
178-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)