HsaALTD0004273-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000119408 | NEK6
Description
NIMA (never in mitosis gene a)-related kinase 6 [Source:HGNC Symbol;Acc:7749]
Coordinates
chr9:127023752-127064333:+
Coord C1 exon
chr9:127023752-127023858
Coord A exon
NA
Coord C2 exon
chr9:127064215-127064333
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTTGTAGGT
5' ss Score
2.94
3' ss Seq
GCCGCTGTTTTCTGTTGCAGTTC
3' ss Score
10.51
Exon sequences
Seq C1 exon
GATGAGGCTGGGACACTGTTCGCAGGAAGAGTCCGGTGTTCTGGCCCCCTGATGTCACCTTCACGGGCCTGACTCACAGTCCTAAATATCTGACAGCGAGATCGCTT
Seq A exon
NA
Seq C2 exon
TTCGTGCCCTCGTGAGGCTGGCATGCAGGATGGCAGGACAGCCCGGCCACATGCCCCATGGAGGGAGTTCCAACAACCTCTGCCACACCCTGGGGCCTGTGCATCCTCCTGACCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119408-3-11,4-11-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.885
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006920=Pkinase=PU(0.6=3.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGTCACCTTCACGGGC
R:
CTGTCCTGCCATCCTGCATG
Band lengths:
100-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)