HsaALTD0004421-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000065320 | NTN1
Description
netrin 1 [Source:HGNC Symbol;Acc:8029]
Coordinates
chr17:8924802-8926708:+
Coord C1 exon
chr17:8924802-8924902
Coord A exon
chr17:8924903-8925187
Coord C2 exon
chr17:8925628-8926708
Length
285 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
CAGCTCCCTTCTCTCCGCAGGCG
3' ss Score
11.72
Exon sequences
Seq C1 exon
GCCCCCGCGCTCCCCTCCGCCCCTCACTCCCAGCGCGAGTGGCGGCGGCGGCGGAGCCTTCGGGGGCGAGCGCGCGTGTGTGTGAGTGCGCGCCGGCCAGC
Seq A exon
GTGAGTGTGTGTGCGCCCCGGGCGCGGGCAGGGCAGCACTCCGAGCTCGGCGGGAGCGGCGGGAGCCGGGCGGCCGCGTAGTCACTCGGGCGAGAGAGGCGGCGGCGGGGCCGGGACCGGGGCTGGGGCTGGGGCAGCGGCGGCCGCGCCGGGCATGGAGCTGGCAAGCCCGCGCTGAGGCGGGACGCGCCTGCTAGCAGCGAGCGAGAGGCTCTCCGGCGACCGGCGCGCGGGCTCCCCGGAGGGGCCAGGCAAACTTTTCTTTCTCTTTTGCCCCCTCCAGAG
Seq C2 exon
GCGCCTTCTGCGGCAGGCGGACAGATCCTCGGCGCGGCAGGGCCGGGGCAAGCTGGACGCAGCATGATGCGCGCAGTGTGGGAGGCGCTGGCGGCGCTGGCGGCGGTGGCGTGCCTGGTGGGCGCGGTGCGCGGCGGGCCCGGGCTCAGCATGTTCGCGGGCCAGGCGGCGCAGCCCGATCCCTGCTCGGACGAGAACGGCCACCCGCGCCGCTGCATCCCGGACTTTGTCAATGCGGCCTTCGGCAAGGACGTGCGCGTGTCCAGCACCTGCGGCCGGCCCCCGGCGCGCTACTGCGTGGTGAGCGAGCGCGGCGAGGAGCGGCTGCGCTCGTGCCACCTCTGCAACGCGTCCGACCCCAAGAAGGCGCACCCGCCCGCCTTCCTCACCGACCTCAACAACCCGCACAACCTGACGTGCTGGCAGTCCGAGAACTACCTGCAGTTCCCGCACAACGTCACGCTCACACTGTCCCTCGGCAAGAAGTTCGAAGTGACCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000065320-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.074
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0005512=Laminin_N=WD(100=68.5),PF0005319=Laminin_EGF=WD(100=15.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTCCCAGCGCGAGTG
R:
ACAAAGTCCGGGATGCAGC
Band lengths:
308-593
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)