HsaALTD0004421-2/4 @ hg38
Alternative 5'ss
Gene
ENSG00000065320 | NTN1
Description
netrin 1 [Source:HGNC Symbol;Acc:HGNC:8029]
Coordinates
chr17:9021465-9023391:+
Coord C1 exon
chr17:9021465-9021565
Coord A exon
chr17:9021566-9021585
Coord C2 exon
chr17:9022311-9023391
Length
20 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
3' ss Seq
CAGCTCCCTTCTCTCCGCAGGCG
3' ss Score
11.72
Exon sequences
Seq C1 exon
GCCCGGCGGCCCCGCCCCCCGCCCCCGCGCTCCCCTCCGCCCCTCACTCCCAGCGCGAGTGGCGGCGGCGGCGGAGCCTTCGGGGGCGAGCGCGCGTGTGT
Seq A exon
GTGAGTGCGCGCCGGCCAGC
Seq C2 exon
GCGCCTTCTGCGGCAGGCGGACAGATCCTCGGCGCGGCAGGGCCGGGGCAAGCTGGACGCAGCATGATGCGCGCAGTGTGGGAGGCGCTGGCGGCGCTGGCGGCGGTGGCGTGCCTGGTGGGCGCGGTGCGCGGCGGGCCCGGGCTCAGCATGTTCGCGGGCCAGGCGGCGCAGCCCGATCCCTGCTCGGACGAGAACGGCCACCCGCGCCGCTGCATCCCGGACTTTGTCAATGCGGCCTTCGGCAAGGACGTGCGCGTGTCCAGCACCTGCGGCCGGCCCCCGGCGCGCTACTGCGTGGTGAGCGAGCGCGGCGAGGAGCGGCTGCGCTCGTGCCACCTCTGCAACGCGTCCGACCCCAAGAAGGCGCACCCGCCCGCCTTCCTCACCGACCTCAACAACCCGCACAACCTGACGTGCTGGCAGTCCGAGAACTACCTGCAGTTCCCGCACAACGTCACGCTCACACTGTCCCTCGGCAAGAAGTTCGAAGTGACCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000065320-1-0,2-0,3-0,4-0-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.074
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0005512=Laminin_N=WD(100=68.5),PF0005319=Laminin_EGF=WD(100=15.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACTCCCAGCGCGAGT
R:
CGCGCCGAGGATCTGTCC
Band lengths:
95-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains