HsaALTD0004421-4/4 @ hg38
Alternative 5'ss
Gene
ENSG00000065320 | NTN1
Description
netrin 1 [Source:HGNC Symbol;Acc:HGNC:8029]
Coordinates
chr17:9021465-9023391:+
Coord C1 exon
chr17:9021465-9021565
Coord A exon
chr17:9021566-9021870
Coord C2 exon
chr17:9022311-9023391
Length
305 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
CAGCTCCCTTCTCTCCGCAGGCG
3' ss Score
11.72
Exon sequences
Seq C1 exon
GCCCGGCGGCCCCGCCCCCCGCCCCCGCGCTCCCCTCCGCCCCTCACTCCCAGCGCGAGTGGCGGCGGCGGCGGAGCCTTCGGGGGCGAGCGCGCGTGTGT
Seq A exon
GTGAGTGCGCGCCGGCCAGCGTGAGTGTGTGTGCGCCCCGGGCGCGGGCAGGGCAGCACTCCGAGCTCGGCGGGAGCGGCGGGAGCCGGGCGGCCGCGTAGTCACTCGGGCGAGAGAGGCGGCGGCGGGGCCGGGACCGGGGCTGGGGCTGGGGCAGCGGCGGCCGCGCCGGGCATGGAGCTGGCAAGCCCGCGCTGAGGCGGGACGCGCCTGCTAGCAGCGAGCGAGAGGCTCTCCGGCGACCGGCGCGCGGGCTCCCCGGAGGGGCCAGGCAAACTTTTCTTTCTCTTTTGCCCCCTCCAGAG
Seq C2 exon
GCGCCTTCTGCGGCAGGCGGACAGATCCTCGGCGCGGCAGGGCCGGGGCAAGCTGGACGCAGCATGATGCGCGCAGTGTGGGAGGCGCTGGCGGCGCTGGCGGCGGTGGCGTGCCTGGTGGGCGCGGTGCGCGGCGGGCCCGGGCTCAGCATGTTCGCGGGCCAGGCGGCGCAGCCCGATCCCTGCTCGGACGAGAACGGCCACCCGCGCCGCTGCATCCCGGACTTTGTCAATGCGGCCTTCGGCAAGGACGTGCGCGTGTCCAGCACCTGCGGCCGGCCCCCGGCGCGCTACTGCGTGGTGAGCGAGCGCGGCGAGGAGCGGCTGCGCTCGTGCCACCTCTGCAACGCGTCCGACCCCAAGAAGGCGCACCCGCCCGCCTTCCTCACCGACCTCAACAACCCGCACAACCTGACGTGCTGGCAGTCCGAGAACTACCTGCAGTTCCCGCACAACGTCACGCTCACACTGTCCCTCGGCAAGAAGTTCGAAGTGACCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000065320-1-0,2-0,3-0,4-0-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.074
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0005512=Laminin_N=WD(100=68.5),PF0005319=Laminin_EGF=WD(100=15.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACTCCCAGCGCGAGT
R:
CGCTCACCACGCAGTAGC
Band lengths:
366-671
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains