HsaALTD0004505-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000070882 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:16370]
Coordinates
chr7:24872189-24874355:-
Coord C1 exon
chr7:24874105-24874355
Coord A exon
NA
Coord C2 exon
chr7:24872189-24872254
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
GTGGCTGTACTGTTTCACAGGTC
3' ss Score
8.39
Exon sequences
Seq C1 exon
GGCCTGTCCTTGATAGTGGTCGGGAAGCGAAGTCCCGGAGAAGAACGTGCCTGCCGGCGCCCTGCCCGAGCAGCAGTAACATCAGCCTGTGGAACATCCTGAGGAACAACATCGGGAAGGACCTGTCCAAGGTGGCCATGCCGGTGGAGCTGAACGAGCCCCTGAACACGCTGCAGAGGCTCTGCGAGGAGCTGGAGTACAGCGAGCTCCTGGACAAGGCCGCGCAGATTCCCAGCCCCCTGGAAAGGATG
Seq A exon
NA
Seq C2 exon
GTCACCAATGTGGAGAAGCAGGAAGAGGAACAGACACCCAGGTTTCAAGAACACAGGCAGTCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000070882-31-31,33-31-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.218 A=NA C2=0.773
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=PU(15.9=65.5)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(5.7=100)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGTCCTTGATAGTGGTCG
R:
TGTGACTGCCTGTGTTCTTGA
Band lengths:
315-714
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)