Special

HsaALTD0004505-1/2 @ hg38

Alternative 5'ss

Gene
ENSG00000070882 | OSBPL3
Description
oxysterol binding protein like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr7:24830768-24834736:-
Coord C1 exon
chr7:24834486-24834736
Coord A exon
NA
Coord C2 exon
chr7:24830768-24830905
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
TTCTTTTCTCTTGTCCTTAGGTA
3' ss Score
12.69
Exon sequences
Seq C1 exon
GGCCTGTCCTTGATAGTGGTCGGGAAGCGAAGTCCCGGAGAAGAACGTGCCTGCCGGCGCCCTGCCCGAGCAGCAGTAACATCAGCCTGTGGAACATCCTGAGGAACAACATCGGGAAGGACCTGTCCAAGGTGGCCATGCCGGTGGAGCTGAACGAGCCCCTGAACACGCTGCAGAGGCTCTGCGAGGAGCTGGAGTACAGCGAGCTCCTGGACAAGGCCGCGCAGATTCCCAGCCCCCTGGAAAGGATG
Seq A exon
NA
Seq C2 exon
GTATATGTGGCAGCCTTTGCCATATCAGCGTATGCATCTAGCTACTACCGAGCTGGAAGCAAGCCATTTAATCCGGTTCTTGGAGAAACATATGAATGTATTCGGGAGGACAAGGGCTTCCAGTTTTTTTCAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000070882-51-49,52-49-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.241 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0123713=Oxysterol_BP=PU(15.9=65.5)

							
A:
NA

							
C2:
PF0123713=Oxysterol_BP=FE(13.0=100)

						

					

				








    
Main Inclusion Isoform:
ENSP00000315410





     
                   









    
Main Skipping Isoform:
ENSP00000386801





     
      









    
Other Inclusion Isoforms:
ENSP00000379706, ENSP00000379708, ENSP00000386953
          









    
Other Skipping Isoforms:
ENSP00000386325, ENSP00000386429, ENSP00000386990
  



Associated events







Other assemblies


hg19




Conservation


Mouse
(mm10)
chr6:50322973-50323223 
HIGH PSI
MmuALTD1017044-1/2
(Osbpl3)
Mouse
(mm9)
No conservation detected
Rat
(rn6)
chr4:80055630-80055631 
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
chr2:31793534-31793535 
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr16:21562444-21562445 
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
ATAGTGGTCGGGAAGCGAAGT

				
R: 
AAGCCCTTGTCCTCCCGAATA

				
Band lengths: 
358-757

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Autistic and control brains
  • Pre-implantation embryo development





Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"