HsaINT0118633 @ hg38
Intron Retention
Gene
ENSG00000070882 | OSBPL3
Description
oxysterol binding protein like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr7:24830768-24834736:-
Coord C1 exon
chr7:24834486-24834736
Coord A exon
chr7:24830906-24834485
Coord C2 exon
chr7:24830768-24830905
Length
3580 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
TTCTTTTCTCTTGTCCTTAGGTA
3' ss Score
12.69
Exon sequences
Seq C1 exon
GGCCTGTCCTTGATAGTGGTCGGGAAGCGAAGTCCCGGAGAAGAACGTGCCTGCCGGCGCCCTGCCCGAGCAGCAGTAACATCAGCCTGTGGAACATCCTGAGGAACAACATCGGGAAGGACCTGTCCAAGGTGGCCATGCCGGTGGAGCTGAACGAGCCCCTGAACACGCTGCAGAGGCTCTGCGAGGAGCTGGAGTACAGCGAGCTCCTGGACAAGGCCGCGCAGATTCCCAGCCCCCTGGAAAGGATG
Seq A exon
GTGAGGAGTCAGCCTTCCCTTGCCACTGTCCAGCCTCGGTCCCCAAGCCACGAGGCCATTCACGGGGCCCATCAGAGAGACAGCCCCTGTTCCCTCCGGTTTCATTTTGATTGTTCCGTAAACAGGTTCATTACTCAGAGCTGTCTGGCTTCCTCCGCCTGGCTGTTTCCAGTCACCTTGTGAGGATTTGGAGACGGGGTTGGGGTGCTTCTCCGTGGCACTTGGTGCCTGGGGTAGTTCTGTTCTGTGGGTTTGTGCTTCCTCTTTCTCCAGAAGCCTTCTGGCTGATTGTTCCGATGTGCCCGGCTGGAAAACATGTCTTTAGGGCTGTCTGCATGTTTATTTTTACTTCCCTGGGTGGACAGAATTTAATTTCTCGAGCTGTTTTTCTCATCCAGGGTAAGTTTCCCCTGAGAATGTTTGTGTTTATTTCTGGAATTGTCCCATCAGCTCCTAGGTTTTTGGAAAATAAAGTTCACAAGAGGAGGTTTTCACATCAGAAATATTCTTTTTTTCTCTCTCCCTCTTATTTTATAGAGTACTTAAAAAAAATCGTAGAAAAGCCTTCTCTTCCCTACTGGGCATCAGCTCCAGTCACAGCATGCTGGCTTTTAAAAGGGCTTCCAAGTATTTCTCATCTTTCCCCCATCTCATGGGTAGGGAGATTGGGAAGGGAGTACCCAAAGGGCAAGACTCTGGGCAGATCAGCCCTCTCTATGACTGTGACTAACTTTGTTCTTGAACGTGGGTGTCTGTACCGCTTTTTGCTTCCTTATATTCAGTGACCTTAGAGCAGTAAGGTCATTGTCTCTATGGGATGCTGGGACAGCAGTGTCCCCCAGATGCAGAGTCTCTCTCCTGGGCATTTGCCAATTGGCTACATTGGAATTGGAGTGCCCCCTCGGCTTCACAGACCTAGCCCTGCCGACACTCCCCATTGATAGAGGATGCTATTATTTTCTACATTCTAAGCATTCTGCAGTTCTAGCGCTCATTAAAACATCATTACTTCAATGATTTGAAGATTAAGGGGGAATCTTAACTGCTGTCTGAGAGGGATAGCCCATAGTCATTCTGCCCAGTCTCCAGGGCCTCCCCATCAAAGAGACTTTCTCTTTTTTTGAGTCAGGGTCTTTGTCACCCAGGCTGGAGTGCAGCGGTGCAGTCCTACCTCACTGCAACCTCGAACTCCTAGACTCAAGCAACCCTCCTGCCCTGGCCTCCCAAAATGCTGGGATTACAGGCATGAGTCACTGTACCTGGCCCAAGAGACTTTCTTTCTTGTTACTGATAATCAGGGTAGGAGACAAAAACAAGCTGTATTTTTTAAACTCTTCTTTGTTACTTGTCCCCAGATAATTTTTGCTGAATAAAAGGAAGGCAAATCTTCTAGAAATAGCTTCTAAGCAAGTGTTAAAAGTCAGCATTTGTGGACAGCTCTTTTCTTTAAAGGAAATGATTGGCTTTGAGGATGAAAGTTTCTTAAAGATGTTTCATGCTGTGGCAATTTAGAGACCCTTAGGATATTCAGCTGATTGATCAGTGTAATTGACCTTGAGCAGAGGTTTGAGGAGAGGCTTCTCATCCCCAACATAACCACTAAGCAGGAGTCTTATCTCATGGGTTTTGTTTACTGTCCTGCACGTCTGCTTATGCCCCTGCCTGGACTCTCCCTCATGCCACCAACCCACAGGGAGAGTGCTTCCTTCTGCCTCCCCTTCGCTCTGTCTTCCCCACAACATCATGAATGGCACTAGGTTCTTTCATCGGTTGTGTTCTATTTTACATGGTGAAGGTGATTAAGGGTTGATTCAGCATTCCATACACAGTGTGGCTGTACTGTTTCACAGGTCACCAATGTGGAGAAGCAGGAAGAGGAACAGACACCCAGGTTTCAAGAACACAGGCAGTCACAAGTAGGACTGACTTGAGTGCAGTTGATTTTTTCTTCTTCTTTTTTTTTTTTTTTTTTCTTTGAGGCAGAGTCTCTCTCTGTCGCCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAACCTCCACCTCCCAGATTCAAGTGATTCTCCTACTTCAGCCTCCTGAGTAGCTGGGATTACAGGCGTGCGCCACCACACCCGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGATCAGGCTGGTCTCGAACTCCTGACCTCGTGATCTGCCCACCTCGGCCTCCCAAAGTGCTGAGATTACAGGTGTGAGCTACCGTGCCTGGCCCTTCTTTTTTTTTTTTTTTTTTTGAGACAGGGTCTTGCTCTGTCACCCAGGCTGGAATGCAGTGGTGCAATCACGGCTCATTGCAGCCTCGACCTCCTGGGCTCAATCAGTCCTCCCACTTCTGCCTCCCAAGCAGCTGGGACCACAAGCATGTGCCACCACACCCAGCTATGTCTTTTGTATTTTTTTTGTAGAGAAGAGGTTTCGCCATGTTGTCCAGGCTGGTCTTGAACTCTTGGGCTCAAGCAGATCCACCTGCCTCGGTCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCACCCAGCCGAGTATAGCTGATTTTTATAAGCCATCCAGCTGCTCTAGAGAATTCTATAGCATGAGGTGGTGAGGTGGTCCCTATTACAGGCAACATCAAAAATTTAGCAGAAGGTTATGTGACTAGTGGGCATTTATGAAAGGCACTCAGCTCTTCTTCAGTATAAGAAACTGCACGAAATGTGCTGGGAAGAAGAAATCTTGAGATTGTTACTACCTGACATTAGAAAGGAAAATTGGACATCCCTGCTTAGGCTTAACTGTTGTTACATACATGGAAGAAAAGACAAAGAAGGTAATGTGCCTCCCTGATGCCCTGACGGGGAATTGCTAAAGACGCCAAGACCTCACAGTAAGGGCTGCCCAGAGAGTTTGTTCACTTCGTGTTCACGTAAAGTTTTTCTTCCTTCCTCTCTTTATTTTAATTTTTTTTTTGGATGTTTCACTTTTCCTCCCAAAAAAGCAGAACTTTAAAGTCACTATATCCTGTGGCTTGTTTCCCAGGCTTAGGAAATGACTCACAGATTTTCTTTGGTCAAAATGAATGTTTTGGTTTCTATAATACCACATTTTGAATGGTTAAATTTATGATGCTGATTCCTGAGTTTTGGAGGGATTTTTTAACACTCCTTTTTTAATACTCTTTCCCCACTCCACCCCTGAAGGCTTAGCACCATATTAGGATCCTCAGATACTGTCAGGCTTAAAAGTACTGGACTCAGCTTAACAGTTTCCAGAAACAGTGTAGTCCAGTTTAGAAATGTCATCGTCTTTATAGCATCTCCCAACTTTTAGGCATCAAGATAAATGGACAGCTTTAAAACATTGGGTTAATTTGTTTTGGGGCCCAGATAAACATTATTTAAACCTACAATTTTAAACCTATGTTGTTTAAAAACAACCAAAGACAAATCTTTGGCTTTCTGAAAGAAAATCATAGAGGTTTTATTTTGTTTAGTTCTTTGTGAACAATAAAGCTCTTGGTGACACGGAAATGACAAAGTTCTTTTCTCTTGTCCTTAG
Seq C2 exon
GTATATGTGGCAGCCTTTGCCATATCAGCGTATGCATCTAGCTACTACCGAGCTGGAAGCAAGCCATTTAATCCGGTTCTTGGAGAAACATATGAATGTATTCGGGAGGACAAGGGCTTCCAGTTTTTTTCAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000070882:ENST00000313367:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=PU(15.9=65.5)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(13.0=100)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development