RnoINT0105769 @ rn6
Intron Retention
Gene
ENSRNOG00000010011 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:RGD Symbol;Acc:1564287]
Coordinates
chr4:80052384-80055882:-
Coord C1 exon
chr4:80055632-80055882
Coord A exon
chr4:80052522-80055631
Coord C2 exon
chr4:80052384-80052521
Length
3110 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
TTCCCTCCTTCTGCTCACAGGTA
3' ss Score
12.07
Exon sequences
Seq C1 exon
GTCCTGTTCTCGAAAGTAGTGGGGAAGCCAGGTCCAAAAGGCGGACCAGCCTGCCAGCGCCGGGACCCAACACCAGTAGCGTGAGTGTGTGGAGCATCCTGCGCAACAACATTGGGAAGGACCTGTCCAAGGTGGCCATGCCGGTAGAGCTGAACGAGCCCCTGAACACACTGCAGCGGCTCTGCGAGGAGCTAGAATACAGCGAGCTTCTGGACAAGGCTGCGCACATGCCCAGTCCCCTGGAGAGGATG
Seq A exon
GTGAGGCCCCCACCTCCCACCTGAGTCTCCTGAGCCATTCTGAGCCCAGAGGCCTAGGGGCCAGTCCTCATTTTCTGATTGCTCCTAGGAGATCATGGCTATTTCTCAGAAATAGGCAGTCCTCCCCTACCCCGGCTGTGAGCAGCCACCGCATCAGAAATTGCTTTAGGGGGAAGCAAGGGGCTCCTGCAGCTGGTGCCTGGGGGCGGGTGTTTCTGCTTTTCTTGTGCTTGCTCTTTCTCTGGAAGCTTCTGTCTGATGGTTCTGATAGGTCTGGCTGGAAAAAAAACATGGCTTTAAGCTGTGTTTATTTTTACTACCCTCAGAATTTAATCTCTCGAGTTGTTTCTCTCATCCAGAGTAAATTTCCCTTGAGAATGTTTTTGTTTATTTCTGGAATTGTCCCATTTGTTCCTACACTTTTGGAAAATATCATTCACAGAAGGACATTATACCAGAAAAGTTCCTCCCCCTTCTCTCCCTCCCTTTCTCCCTCCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTCCCCATAGAGTTATTTAAATAAGCAACTTTGATTGTGAAACTCCTGAGAATTTTAGTTTAGGAAACCGTTCTTCCAGCCTCCTCATATGTGAGCTGGTGTAGCTGGGTCCTTGCCTGTGTAGTGAGCTGGGACTTCAGTGTCCACCTGCACCCGCACCACCTCCACACATGCAGTTCTCACTTGCTATTTGCTTACTGACCAAACCTCCCCCAGGGGGTGTGGCTTCACAGAACTAGGCAACAACAATCCCACACTCCCTGTGACAGAGGATGCAGACCCTTCAGTCTCCACACAGCCCACAGTTCTGACCCTCATAGAGCTTCTTAGCTGCCATGATTTGGAAATGAAAGGGGACCCTCAGATCTTGCTAAAAGAGACATCCTGTGGTCATTTGGTCTGATCTCTGGGGTCTTCTCATCAAAGAGATTTTTCTCTCTTCATACTAATGATCAAAAGTTTCAAAAACCACAAGTTGTGATTTTGCCCTTTTTTTTAAATTTCCCAAAGAGAATGTCCGCTGAAGACAGGAGACAGGAAGCTTCTAAAGCAAATGGTAAAAGTCGGCATTTATGGCAGCTGGTTCAAAGAAAATGATTCGCTTTGAACATGAAAATATTCTAAAGTGTGTCTCTCTCCTGTGGCAGTTTAGAGCCCTTAAGATGTTCAACAGTTGAGCCCTGCACTTGACCTTGAACAGTTATTTGTGGGAAGCACAGTGCTTCCAGCCTGGAATCCCACACTGAAGCTGAGGCAGGAGGATTGGTGCAAGTTTGGGGCTGACTGATTCCTATTCTTGACCTGGACAAAAGTTTGAGCTGAGCATAGTATAATCACACCTGTAGTCTCAGCACTGGGGAAACTGAGGCAGGAGGATTGGTGCAATTCCAAGCCAGCATGGCCTATAATATGAGATCTTGCCACAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAATAAAAAAGTTTCAGGCAAGACCAAATGTCCTGAGCATGGCCAAGGGGCTGAAGCCACAGCCCAGATGTTTCCTTTCCTGCTGTGCAGTCACCACGTTCTCCTGTGTAGGCTCCTTGTGTCACCAAAGGGAAGAGTTTGTTCTGCCCACCTCTCCTTACTGCGGGTATCAAGATTAACACTGTTGTTTAGTCTGCTGTCATGTGTTTGTGCATGTGTGTGCTCGAGTGAGTTTATATGCACCACATGTGTGCGGGAGCCCTCAGAGGGCAGAAGAGGATGAGGTTGTGGGTACTGGGAACCATGCTCTGGGCTTCTGCAGGGGCAGCAGTGCTTTTAAACAACAAGCCACCTCTCCAGCCCTGTGGTTTACATTTTAAAGGAGACTCAAGGTGTTTGGCATTCCATATAGACAGTGAGCTTACTGTTTGGTGTGTCAAAAGCTAAAGAGATGGAGGGGAAATGGAAATGGAGACAGCGTAGCCAGTAATGTGTTTGTGGTATAAGCAGGAGGACCTGACTTTGATCCCTAGAACCTCTGAAAAGACTGTCAGAGTGGTAACCCTTAGCCCTGGAAAGTGGCAGGACAGGTGGCTTCTTGGAGCTTGCTGGCCAAATTAGTGATCTCCATGTTCAGTAACAGACCCTGTCTCAAAGAACTATGGTGAGGAGCAACTGAGGAAGACACCTGATTCTGACCTTTCGCCTCCATGACATGGCACTCGTGCGCACATGTGCACACACATATAAACACAGCCAGTTATAGGTGAGCTGAACTGGGTATGGCACACCTCATAGGGTGGTCAGAGAAGAATCTTGAGGCCTGCTACTCTTCGACATTAAAAATAAATCTCTTTTACTACTGTCACATAACTTTGAAGGGAAAACAAGATACAGAGAAGAGAAGAATCTGTTTTCTTTGATGCTCTGAGGAAAAAGCTTCGAAAGAGCATGCTGGAATTCTCGTGGTGACGGCCAGGAAAGGATTCTGCTAATCCCATGTGCACATGTAGTTTACACTCCCCTCTTCCCCTCCTCCCCCCTCCTCCACCTGCACCTCCTCCTCTCATACCCGTCTTCGCTCCCTCGTCCTCCTCCTGTTGCCTCTCAGGGCGCATCAATGCCTCTCACAGTTCCTTTGATCAGTGTGATTTTTAAGTTTCTGGGTTTCTACTGTATCAATTGATGACTAGTTGAGTGTATTATATTTATGAATTTAGGGGATCCTTTGACGTCCCTGTACTCTTACCACCTGCCCTGATACCCTGACATTGGGTCTGCCCAAACTGCCTGGCTCCATGTAGGGCATTTAGCGTTGACCTGCTGTTGGGTGAATTTCGTCCCCTCAATCAGATCTTGGCTTCCAGATTTCAGTCACCAAAATAAGCAGGCAATTTAAACTGGTTGACTTGCCTCTGGGTCCAAATGAGCATTGTTTAAGCCTAAGTTGCTTGAGTTGTCTTTAAAACCAAAGGCCAATCCTTGTCTTTCTGAAATAGAAGGTTTTATTTCTTGGTGACACAGAAGTAAGCCGGCCCCTTCCCTCCTTCTGCTCACAG
Seq C2 exon
GTATACGTGGCAGCCTTCGCCATCTCTGCATATGCATCCAGCTACTTCCGGGCAGGCAGCAAGCCATTTAACCCGGTCCTTGGAGAAACGTACGAATGCATCCGACAGGACAAGGGTTTCCAGTTTTTTGCCGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010011:ENSRNOT00000013828:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.262 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=PU(15.9=65.5)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]