HsaINT0118633 @ hg19
Intron Retention
Gene
ENSG00000070882 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:16370]
Coordinates
chr7:24870387-24874355:-
Coord C1 exon
chr7:24874105-24874355
Coord A exon
chr7:24870525-24874104
Coord C2 exon
chr7:24870387-24870524
Length
3580 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
TTCTTTTCTCTTGTCCTTAGGTA
3' ss Score
12.69
Exon sequences
Seq C1 exon
GGCCTGTCCTTGATAGTGGTCGGGAAGCGAAGTCCCGGAGAAGAACGTGCCTGCCGGCGCCCTGCCCGAGCAGCAGTAACATCAGCCTGTGGAACATCCTGAGGAACAACATCGGGAAGGACCTGTCCAAGGTGGCCATGCCGGTGGAGCTGAACGAGCCCCTGAACACGCTGCAGAGGCTCTGCGAGGAGCTGGAGTACAGCGAGCTCCTGGACAAGGCCGCGCAGATTCCCAGCCCCCTGGAAAGGATG
Seq A exon
GTGAGGAGTCAGCCTTCCCTTGCCACTGTCCAGCCTCGGTCCCCAAGCCACGAGGCCATTCACGGGGCCCATCAGAGAGACAGCCCCTGTTCCCTCCGGTTTCATTTTGATTGTTCCGTAAACAGGTTCATTACTCAGAGCTGTCTGGCTTCCTCCGCCTGGCTGTTTCCAGTCACCTTGTGAGGATTTGGAGACGGGGTTGGGGTGCTTCTCCGTGGCACTTGGTGCCTGGGGTAGTTCTGTTCTGTGGGTTTGTGCTTCCTCTTTCTCCAGAAGCCTTCTGGCTGATTGTTCCGATGTGCCCGGCTGGAAAACATGTCTTTAGGGCTGTCTGCATGTTTATTTTTACTTCCCTGGGTGGACAGAATTTAATTTCTCGAGCTGTTTTTCTCATCCAGGGTAAGTTTCCCCTGAGAATGTTTGTGTTTATTTCTGGAATTGTCCCATCAGCTCCTAGGTTTTTGGAAAATAAAGTTCACAAGAGGAGGTTTTCACATCAGAAATATTCTTTTTTTCTCTCTCCCTCTTATTTTATAGAGTACTTAAAAAAAATCGTAGAAAAGCCTTCTCTTCCCTACTGGGCATCAGCTCCAGTCACAGCATGCTGGCTTTTAAAAGGGCTTCCAAGTATTTCTCATCTTTCCCCCATCTCATGGGTAGGGAGATTGGGAAGGGAGTACCCAAAGGGCAAGACTCTGGGCAGATCAGCCCTCTCTATGACTGTGACTAACTTTGTTCTTGAACGTGGGTGTCTGTACCGCTTTTTGCTTCCTTATATTCAGTGACCTTAGAGCAGTAAGGTCATTGTCTCTATGGGATGCTGGGACAGCAGTGTCCCCCAGATGCAGAGTCTCTCTCCTGGGCATTTGCCAATTGGCTACATTGGAATTGGAGTGCCCCCTCGGCTTCACAGACCTAGCCCTGCCGACACTCCCCATTGATAGAGGATGCTATTATTTTCTACATTCTAAGCATTCTGCAGTTCTAGCGCTCATTAAAACATCATTACTTCAATGATTTGAAGATTAAGGGGGAATCTTAACTGCTGTCTGAGAGGGATAGCCCATAGTCATTCTGCCCAGTCTCCAGGGCCTCCCCATCAAAGAGACTTTCTCTTTTTTTGAGTCAGGGTCTTTGTCACCCAGGCTGGAGTGCAGCGGTGCAGTCCTACCTCACTGCAACCTCGAACTCCTAGACTCAAGCAACCCTCCTGCCCTGGCCTCCCAAAATGCTGGGATTACAGGCATGAGTCACTGTACCTGGCCCAAGAGACTTTCTTTCTTGTTACTGATAATCAGGGTAGGAGACAAAAACAAGCTGTATTTTTTAAACTCTTCTTTGTTACTTGTCCCCAGATAATTTTTGCTGAATAAAAGGAAGGCAAATCTTCTAGAAATAGCTTCTAAGCAAGTGTTAAAAGTCAGCATTTGTGGACAGCTCTTTTCTTTAAAGGAAATGATTGGCTTTGAGGATGAAAGTTTCTTAAAGATGTTTCATGCTGTGGCAATTTAGAGACCCTTAGGATATTCAGCTGATTGATCAGTGTAATTGACCTTGAGCAGAGGTTTGAGGAGAGGCTTCTCATCCCCAACATAACCACTAAGCAGGAGTCTTATCTCATGGGTTTTGTTTACTGTCCTGCACGTCTGCTTATGCCCCTGCCTGGACTCTCCCTCATGCCACCAACCCACAGGGAGAGTGCTTCCTTCTGCCTCCCCTTCGCTCTGTCTTCCCCACAACATCATGAATGGCACTAGGTTCTTTCATCGGTTGTGTTCTATTTTACATGGTGAAGGTGATTAAGGGTTGATTCAGCATTCCATACACAGTGTGGCTGTACTGTTTCACAGGTCACCAATGTGGAGAAGCAGGAAGAGGAACAGACACCCAGGTTTCAAGAACACAGGCAGTCACAAGTAGGACTGACTTGAGTGCAGTTGATTTTTTCTTCTTCTTTTTTTTTTTTTTTTTTCTTTGAGGCAGAGTCTCTCTCTGTCGCCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAACCTCCACCTCCCAGATTCAAGTGATTCTCCTACTTCAGCCTCCTGAGTAGCTGGGATTACAGGCGTGCGCCACCACACCCGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGATCAGGCTGGTCTCGAACTCCTGACCTCGTGATCTGCCCACCTCGGCCTCCCAAAGTGCTGAGATTACAGGTGTGAGCTACCGTGCCTGGCCCTTCTTTTTTTTTTTTTTTTTTTGAGACAGGGTCTTGCTCTGTCACCCAGGCTGGAATGCAGTGGTGCAATCACGGCTCATTGCAGCCTCGACCTCCTGGGCTCAATCAGTCCTCCCACTTCTGCCTCCCAAGCAGCTGGGACCACAAGCATGTGCCACCACACCCAGCTATGTCTTTTGTATTTTTTTTGTAGAGAAGAGGTTTCGCCATGTTGTCCAGGCTGGTCTTGAACTCTTGGGCTCAAGCAGATCCACCTGCCTCGGTCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCACCCAGCCGAGTATAGCTGATTTTTATAAGCCATCCAGCTGCTCTAGAGAATTCTATAGCATGAGGTGGTGAGGTGGTCCCTATTACAGGCAACATCAAAAATTTAGCAGAAGGTTATGTGACTAGTGGGCATTTATGAAAGGCACTCAGCTCTTCTTCAGTATAAGAAACTGCACGAAATGTGCTGGGAAGAAGAAATCTTGAGATTGTTACTACCTGACATTAGAAAGGAAAATTGGACATCCCTGCTTAGGCTTAACTGTTGTTACATACATGGAAGAAAAGACAAAGAAGGTAATGTGCCTCCCTGATGCCCTGACGGGGAATTGCTAAAGACGCCAAGACCTCACAGTAAGGGCTGCCCAGAGAGTTTGTTCACTTCGTGTTCACGTAAAGTTTTTCTTCCTTCCTCTCTTTATTTTAATTTTTTTTTTGGATGTTTCACTTTTCCTCCCAAAAAAGCAGAACTTTAAAGTCACTATATCCTGTGGCTTGTTTCCCAGGCTTAGGAAATGACTCACAGATTTTCTTTGGTCAAAATGAATGTTTTGGTTTCTATAATACCACATTTTGAATGGTTAAATTTATGATGCTGATTCCTGAGTTTTGGAGGGATTTTTTAACACTCCTTTTTTAATACTCTTTCCCCACTCCACCCCTGAAGGCTTAGCACCATATTAGGATCCTCAGATACTGTCAGGCTTAAAAGTACTGGACTCAGCTTAACAGTTTCCAGAAACAGTGTAGTCCAGTTTAGAAATGTCATCGTCTTTATAGCATCTCCCAACTTTTAGGCATCAAGATAAATGGACAGCTTTAAAACATTGGGTTAATTTGTTTTGGGGCCCAGATAAACATTATTTAAACCTACAATTTTAAACCTATGTTGTTTAAAAACAACCAAAGACAAATCTTTGGCTTTCTGAAAGAAAATCATAGAGGTTTTATTTTGTTTAGTTCTTTGTGAACAATAAAGCTCTTGGTGACACGGAAATGACAAAGTTCTTTTCTCTTGTCCTTAG
Seq C2 exon
GTATATGTGGCAGCCTTTGCCATATCAGCGTATGCATCTAGCTACTACCGAGCTGGAAGCAAGCCATTTAATCCGGTTCTTGGAGAAACATATGAATGTATTCGGGAGGACAAGGGCTTCCAGTTTTTTTCAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000070882-OSBPL3:NM_145321:14
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=PU(15.9=65.5)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)