GgaINT0097803 @ galGal3
Intron Retention
Gene
ENSGALG00000011007 | F1NN81_CHICK
Description
NA
Coordinates
chr2:31587485-31589978:-
Coord C1 exon
chr2:31589728-31589978
Coord A exon
chr2:31587623-31589727
Coord C2 exon
chr2:31587485-31587622
Length
2105 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAC
5' ss Score
4.68
3' ss Seq
TCTCTGTGTGTTATTCCCAGGTA
3' ss Score
10.07
Exon sequences
Seq C1 exon
ACTGTATTTCTGAAAGTGGAATTGGATGCCATTCTAAACGGAGAACATGTTTACCAGCTCCATGTCCCAATACTAGTAACATCAGCCTATGGAATATCCTGAGAAACAACATAGGAAAGGATCTCTCTAAAGTGGCCATGCCTGTGGAATTGAATGAGCCACTTAACACCCTTCAGCGTCTCTGCGAGGAGCTGGAATACAGCGAGCTACTAGATAAAGCAGCTCATACACCTAACCCATTTGAACGGATG
Seq A exon
GTAAACACTTCATTCCAAATTCTTAGTAATAATCAGTATAACTAATAGAGAATACAATGTAAAAATCAACCTGCCAAGTATGTGAAGGTGTTCTGTCCCATTTTTCTTTCCACCCAGCTGAGAGGGGCAGGCTCTAACATGTCTGTATTTGTTTCTGTACCCACTAGTTTTTATTCTTCTGCCTAATTTCTTTTGCTTTGTAAGGAAGCATATCTCCTAAGCTGCCCTCTCCTACAAGGAGGAATGAAGTACAAGTTGAAATCTGGTTTGCATCTTTTTCTCTTCCTTCCTCTTCTAGTTTTCCAAGATTAAGAACTTGGAGCAAAGAGGAGCAAACTATATGCTTCTCTCATGAGTATGGAGGTTAGAATACAATGCATCTTTGTAATGTAAAGTTGCCTAATATGGAAGCAGTTTTCCATGAAAAGCTGTGGGTCTTCCAGCCCTACACTACTGTGATAATTTTATGTTAATTAAGCGAGCTCCATTTGTTTTATCAGTTGATTTTTTTTTGTAGTTTCAGGGATGCTACAAAATGGTCAGGAACTCAAAACTAGGCAATACTTATATATGTTGGTTACTGTATTGATGTTATCTTCCACCAGTGTGGACTCCTGAATTCAGAATTTGATAAATAGCAACGATAAATTGATTTCAGTTGTTTGCTTCCAGATTCACAAGAGCTACTGAACATGTATGCCTATAAATAAAGGATTTTAAAGCTCCTTACATTCTTTTAAATGGAAGTTATGGATTGTACCTCATGCTAAATTAAGTCTTTTGATCAATACTTCTTACTTTAAAATAAGGCTATTAATAATGTAAATAATTACATTATAAATACTGTTTGAAAAGACACTTGCTCCACCCTGACAAACTCTACAAGGATCATAACTTTATATCTCTCCTCAGGATTTAGAGGGTGTAATGCAATGGAAAGTGTATCAATGACAGCCAAATAGCAAGGTCCTAGGCTGTAGCAGGTTAGAGTTTGATCAAATGCAACAGTTGAGATCATAGAAAGGAGGGAAAGAAACCACTTACCTTCAGAAGGCCTTAGCTATGCAGGGGTCTCCAGCAAGATACCTTTGCCTCCACTGCCCACCCTTAATGAGGTCTGGGAAGGGGTGGATCCTGGCTCCAGCCCTTCCAGTCACTTAGGTCCATTGCATACACCTGAGCTCCCTTGGGTTGGCTCTGCCTTCCTACCAGGTGCTCAGTTACTGCTTGGAGCCATGACTTAGCATTTCTGCTACAGAAGGTGTGGCTGTTAATTTGTTCTTAGGTGCAGAACTCTGTTTTGTTTTTGTTAAGAATACGTTAAAAGAAAATGAACGGTAGGTCTTTGTATGGGAATGAAAATAAGCCTTTTCGCTCCTTCCCACACCCAAGCATCTGGAAATTGAGTCAGAATGTAGCGTTCTTTGACTCTGAAAACTCTTGAGGTAGAATTGTCGTTAGCTGTTGCATAGTAATTGCAACATTTCACTTCAGAATAGCTCTTTTATTAACTCGGTTTCCGGATTTGTGAAAGGAAAGCACCTACTCTTTCACAACATGTGGAAAAGGAAATGAAAAGGAAGAAAAATGGTACAAATTGCACTGAACATAGCAAATTTTATGAAAACTCTCACAATATTTCCTGTGCCGTGTTTAGGGTAAGGATAGTGAGTAGATCCATAGAATAATGGACCATAACTGTAAAAGCCAATTACAACACAAAATCTATTGGTGGTTTTTAAGTTTACTGCTTTCAGTTCTGTGTGTTCCAAAATACTGAATTGTTTCAAACTGTTTTCAGAGTCATTGTTTTCAGTTGAATAATTTGCGAAGTTTGATCCTATTAACTCCATCGCCGGCCTCTTGAATGATTCATTGAAAACTGAAAACTTCTGTAATGTATGAGCTAATGCTTAACTCCCAGGAGGAGGCATATGCATTTATGGTCTGCAAATACTGAAAAAAATAAATATCTGATGTCAGGATAAAGCCTTTTTTTTTTTTAATATATATATATGTATACCTTCTGTTAAGACAGAATCTATAGAAAAAGAAAGTGCATGATTGGGATAAAGTAACCAGAATTCTCTGTGTGTTATTCCCAG
Seq C2 exon
GTATATATAGCTGCATTTGCAGTATCTGCGTATGCATCCAGTTACTACCGAGCTGGAAGTAAGCCATTTAACCCCGTTCTTGGAGAAACCTATGAATGTATTCGTGAAGATAAGGGTTTCCAGTTCTTTGCAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011007:ENSGALT00000017923:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=PU(15.9=65.5)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]