BtaINT0105963 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019342 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr4:71456341-71461186:+
Coord C1 exon
chr4:71456341-71456591
Coord A exon
chr4:71456592-71461048
Coord C2 exon
chr4:71461049-71461186
Length
4457 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
GGTTCTTGCCCTTTCCCTAGGTG
3' ss Score
10.21
Exon sequences
Seq C1 exon
GGCCAGTGATCGACAGTGGGGGGGAGGCCAGGTCCAAAAGAAGGACGTGTTTGCCCGCGCCGTGCCCAAAGTCCAGTAACATCAGCTTGTGGAACATCCTGAGAAACAACATCGGGAAGGACCTGTCTAAGGTGGCCATGCCGGTGGAGCTCAATGAGCCCCTCAACACGCTGCAGAGGCTCTGCGAGGAGCTGGAGTACAGCGAACTCCTGGACAAGGCCGCCCAGCTGCCCAACGCCCTGGAAAGGATG
Seq A exon
GTGAGCACGCACCCTGCCACTCACTGGCCTGCCTTCGCAGCTGAGCTGCGGGCGTAGCAGGGCTCCTGTCCCTCTGCTTTCCACCTGGATTACTCATCAGAGAGGCTCATTTCCCAGCCACCTCCGCTTCCTAGCTCTGCCTGGCTGTTTTCAGTCACCTGGTCAGGAATGGCCATTGAGAGCGGCTTCGCTGTAACAGCTGCTGCCTGAGGGTAGTTCTGCTCTGTGATTTTGGGCTTCCTCTTTCTCTAGAACCTTCCATGTGATTGTTCTGATATTGCCTGGCTGGAAAGCATGTCTTGAGGGCTGTCTGAGTGTTTGTTTTTACTACCCTGAGTGGGGAGAATTTAATTTTTTGAGCTCTTTTTTGTTTTGTTGTCCAGGGTAAATTTCCCATGAGAAAGTTTTGGTTTATTTTTGAAATTGTCCTGTTAGCCCTGAATTTTTAGAAAATATCATTCAGTCACAGAAGAGGTTTTCACATCAGAAAGATTCTTCTCCCCCTGCCACTATTTTTTTTTATTTTATTTTTAAATCAGTTTTTATCAGAATATAGTTGATTCCCCTTCCCCACCTCTTCTTCTATAGAATAAGTTAAAGGATAAAAATCATCCTAGAAAAATTAATCTTTTGTTCTCTACTTAGTATCGGTTCTAATCAAGTAATGGGGCTTCCAATAAAGGGGCCTCCAAGAATTTCTCATCCTTCCCCTGCCTTGTGGGGACAGAGGACAGGGGTACCTTGGTGATAAGACTGTGGCCAACTCAACCCTTTCTGTGACTGTGGCTATTTGCTCTTCAAAAGTGAGTGCCTCTTCCTCTTTTTGCCTTCTGGTATGTTACCTGCTCAACAGAAAGCTCATTGTGTGGGATGCTGGCACATCAGGGTCCTCCCCCACATTCAGCATCTCTGTCCTGGGCATTTGCTGATTGGCTGAATCAGAGGGCTCACCTCCAGCTCCAGGGATCCAGCCAGACATCACCCTCTCACTGGTGGAGGATGCCTTTGTTTTCTAAATTGTGCACATTCTGCAGTTTAAACTCATTAAAACTTCAGTTTCTTCAGTAATTTGAGGATTAAGGGAAAATCTTAATTTCTGGTTGAAAGAGACATCCCATCTCATCCCATACTGTCTCCAGGGACTTCGCCCTTCAAAGAGATTTTCTTTCCTGATACTAATGATAATAGGAGTAGGAGAGAAAAACAAGCTGTTTATTTTCTGTCTTCTTTGTTACTCTTCCCCCAGAGAATTTCTATGAACAAAGGGAGGTAAATAGATTCCAAGGAAAGTGTTAAAAGTTATCATTTGTGGACAGTGCTTTTCATTAAAGAGCATGATTGACTTTGAAGATGAAAGCATTTTTAAAGGTGTTTCATTTTTGTAGCAATTTAGAGACCCTTAGGATGTCAGCTGATTGATTGGAGTTATTTGACCTTGAGAAGTAGTTTGAGGAAAGGCACCAATACATTAAGAAAGGAAAGTTCAGAAAAGCATTAGGGAGGAGCCTAGCCCATGTAATAGGTTTGCTGCTCCAAGTATGAGGGTCAGCTCTACCCCTGCAGACATTCTCTCTCATGTTGCCAGCCCACAAGGAAGATGCTTTGTTTTGCCTGCTCCCTCCCTTCTTTCTCCTCCTGCATCATGAATGATTCCAGGTTCTTTTCAACATGTGTTCTATTAAATTGTGAAGGTGATTCAGGGGTGACTCAACATTCCATATAGACACGTGACCTTGCTGCTAATCAGAAAACAGACATCTGAGGAAGCAGAGAGAGGAACAGATACCCAAGTTTCAAGAACAGACTGAATTGAGCACAAGTTGCTCTCCAGCTGCTCTAGAGTGTTTATACACTCTAGTATGAGGTGGTAAGGTGGGTTCAGCTTGTAAAAGGCATTGAAAATTATATGACTAGTGAACATTTATGAAAGGTACCCAGCTTTTTTCCCCAATATAAGAAACTTTATGAAATAAGCAGAGAAGAGGAAACATTGAGATTCTTACTCAGTATTAGAAAGGAAAATTTGCTATTGCTACTTAGGTTTAATTTTTTTGCCTGCCTCCCTCTCAAAAGACCAAAAGAATACAAACATACCTCAGAGATATTGCGTATTTGGTTCCAGACCGCTTCAATAAGGCAAGTATCACAATAAAGTGAGTTGCATGAGTTTTTTGGTTTCCCAGTGCATATAAAACTTATGTTTACACTATACTTAGTCTGTTAAGTATGCAATAACTTTGTATCTAGAAAACAATATCTATACCTTAATTTTTAACATCAAGTGAAGTCAAAGTTGCTTAGTCGTGTCCAACTTTTTGCAACCCTATGGACTGTACAGTCCACGGAATTCTCCAGGCCACAATACTGGAGTGGGTAGCCTATCCCCTCTGCAGGGGATCTTTCCAAACCAGGAATCAAACCACGGTCTTCTGCATTGCAGGCAAATTCTTAGCCCATGCAGGAGACCCCGGTTTGATACCTAGGTCGGGAAGATCCTCTGGAGAAGGGATAGGCTACCCATTCCAATGTTCTTGGACTTCCCTGGTGGCTCAGCTGGTGAAGAATCTGACTGCAATGTGGGAGACCCTGGTTCGATCCCTGGGTTGGGAAGATCCCTTGGAGAAGGAAAAGGCTACCCACTCCAGTATTCTAGCCTGGAGAATTCCATGGACTGTATAGTCCATGAGGTTGCAAAGAGTCAGACACAACTGAGCGACTTTCACTCACATACCTTAATTTTAAAAATGTTCACTGCTAAAGGAAAAATTTGAAATATCGTGAGAATTGCCAAAATATGACACCAAAGGCATGAAGTGAGCAAATGCTGTTGGAAAAACTTGCTGCAAAGTTGCCATAAACCTTCAGTTTATAAGCATCGCAGTTTCTGCAAAGCACAATAAAGCACAGTAAAATGAGGTGGGCCTGTACTGTGGCTCTTCAGTGTCCTGCAAGGGGAGCTGTGTGAAACGCTGAGACCCTCACAGCCAGGGCCAGTAAGATTCTTCTCATTTCATATTCACCTACAATTTTCCTTTTTAAAATTTTTTTTTTTTTTTACCATGCCACGTGGCATTTCGGATCTAGTTCCCCCAACCAGGGATTGAACCCATGACCCATGCATTGGAAGTATGGAGTCTTATCCAGTGGACCACCAGGGAAGTCCTTTCTTTTGCTTTTTGAGTTCTCATTTTTCTTCTAAGAAAAACAAAACTACTTGAAAGCTACTGTGTTCTGTCCTATGACTCATTACCCAGGCTCAGGAAATGACTCCCACAGATTTTCTTTGGTCAGATGAGTTTTTTTGGTTTCTACAATACCAAATTGCAAATGCTTAAACTTAGGATGCTTATTCTTAAACATTTTTTTTTATCTTGGAGTATAGTTGATTAGAAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCACGGACAGAGGAGCCTGGTAGGCTGCAGTCCGTGGGGTTGCTAAGAGTCAGACATGACTGAGTGACTTCACTTTTACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGTCTGGAGAATCCCAGGGATGGGGGAGCCTGGTAGGCTGCCGTCTATGGGGTCGCACAGAGTCGGACATGTCTGAAGCGACTTAGCAGCAGCAGCAGCATAGTTAATTAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCATGGACAGAGGAGCCTGGTGGGCTGCAGTCCATGGGGTCGCTAAAAGTCGGACACGACTGAGCGACTTCACTTTCACTTTTCACTTTCCTGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCCGTCTATGGGATCGTACAGAGTTAGACACGACTGAAGTGACTTAGCAGTAGCAGTAGCAGTATAGTTGATTAACAGTGCTGTGTTAGTCTCAGGTGTATCCCAAAGTGATTCAGTTATACATGTAATATATGTATTGATTCTTTTTCAAGTTCTTCTCCTATTTAGGTTATTACAGAGTATTGAGCAGATTTCCCTGTGACTTACTCCTGAATCTTGAGGGAAGTTTGGCTTCTTTAATGCTCTTTGTCCCTCTCCTCCTCCAGAGCCTTAGCACAAGTCAGGATTGTCAGATAGTGGCAGATTTAGAGGGACTGACTCACCATCTTGAAAGCCTTTATCCACCTGCAGGCATCAAACCAAATGGACAATCTGATTCATTTGTCTCTGGGGCCAAAATGAACACTATTTAAACCCACAACTTGAAATCAAATTCCATTTGGGTGTCATTAAGCCAGGGACAAATCTTTGCCTTTTTTGAAATAAACAGGAAAGAGAGAAAGAGAAGCTATATTTTGCTCATGTCTTTGTGAAAATAAATTTCTTTGTGATGGAGGAGTAACCAGGTTCTTGCCCTTTCCCTAG
Seq C2 exon
GTGTATGTGGCAGCCTTTGCGGTGTCTGCATATGCATCTAGCTACTTTCGTGCCGGGAGTAAGCCTTTTAATCCGGTCCTTGGAGAAACATATGAATGTATTCGTGAGGACAAGGGCTTCCGGTTTTTTTCAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019342:ENSBTAT00000025767:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=PU(15.7=65.5)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]