HsaALTD0004505-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000070882 | OSBPL3
Description
oxysterol binding protein like 3 [Source:HGNC Symbol;Acc:HGNC:16370]
Coordinates
chr7:24830768-24834736:-
Coord C1 exon
chr7:24834486-24834736
Coord A exon
chr7:24834087-24834485
Coord C2 exon
chr7:24830768-24830905
Length
399 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
TTCTTTTCTCTTGTCCTTAGGTA
3' ss Score
12.69
Exon sequences
Seq C1 exon
GGCCTGTCCTTGATAGTGGTCGGGAAGCGAAGTCCCGGAGAAGAACGTGCCTGCCGGCGCCCTGCCCGAGCAGCAGTAACATCAGCCTGTGGAACATCCTGAGGAACAACATCGGGAAGGACCTGTCCAAGGTGGCCATGCCGGTGGAGCTGAACGAGCCCCTGAACACGCTGCAGAGGCTCTGCGAGGAGCTGGAGTACAGCGAGCTCCTGGACAAGGCCGCGCAGATTCCCAGCCCCCTGGAAAGGATG
Seq A exon
GTGAGGAGTCAGCCTTCCCTTGCCACTGTCCAGCCTCGGTCCCCAAGCCACGAGGCCATTCACGGGGCCCATCAGAGAGACAGCCCCTGTTCCCTCCGGTTTCATTTTGATTGTTCCGTAAACAGGTTCATTACTCAGAGCTGTCTGGCTTCCTCCGCCTGGCTGTTTCCAGTCACCTTGTGAGGATTTGGAGACGGGGTTGGGGTGCTTCTCCGTGGCACTTGGTGCCTGGGGTAGTTCTGTTCTGTGGGTTTGTGCTTCCTCTTTCTCCAGAAGCCTTCTGGCTGATTGTTCCGATGTGCCCGGCTGGAAAACATGTCTTTAGGGCTGTCTGCATGTTTATTTTTACTTCCCTGGGTGGACAGAATTTAATTTCTCGAGCTGTTTTTCTCATCCAGG
Seq C2 exon
GTATATGTGGCAGCCTTTGCCATATCAGCGTATGCATCTAGCTACTACCGAGCTGGAAGCAAGCCATTTAATCCGGTTCTTGGAGAAACATATGAATGTATTCGGGAGGACAAGGGCTTCCAGTTTTTTTCAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000070882-51-49,52-49-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.241 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=PU(15.9=65.5)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(13.0=100)
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGTGGTCGGGAAGCGAAGT
R:
AAGCCCTTGTCCTCCCGAATA
Band lengths:
358-757
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development