HsaALTD0004505-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000070882 | OSBPL3
Description
oxysterol binding protein-like 3 [Source:HGNC Symbol;Acc:16370]
Coordinates
chr7:24872189-24874355:-
Coord C1 exon
chr7:24874105-24874355
Coord A exon
chr7:24873706-24874104
Coord C2 exon
chr7:24872189-24872254
Length
399 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
GTGGCTGTACTGTTTCACAGGTC
3' ss Score
8.39
Exon sequences
Seq C1 exon
GGCCTGTCCTTGATAGTGGTCGGGAAGCGAAGTCCCGGAGAAGAACGTGCCTGCCGGCGCCCTGCCCGAGCAGCAGTAACATCAGCCTGTGGAACATCCTGAGGAACAACATCGGGAAGGACCTGTCCAAGGTGGCCATGCCGGTGGAGCTGAACGAGCCCCTGAACACGCTGCAGAGGCTCTGCGAGGAGCTGGAGTACAGCGAGCTCCTGGACAAGGCCGCGCAGATTCCCAGCCCCCTGGAAAGGATG
Seq A exon
GTGAGGAGTCAGCCTTCCCTTGCCACTGTCCAGCCTCGGTCCCCAAGCCACGAGGCCATTCACGGGGCCCATCAGAGAGACAGCCCCTGTTCCCTCCGGTTTCATTTTGATTGTTCCGTAAACAGGTTCATTACTCAGAGCTGTCTGGCTTCCTCCGCCTGGCTGTTTCCAGTCACCTTGTGAGGATTTGGAGACGGGGTTGGGGTGCTTCTCCGTGGCACTTGGTGCCTGGGGTAGTTCTGTTCTGTGGGTTTGTGCTTCCTCTTTCTCCAGAAGCCTTCTGGCTGATTGTTCCGATGTGCCCGGCTGGAAAACATGTCTTTAGGGCTGTCTGCATGTTTATTTTTACTTCCCTGGGTGGACAGAATTTAATTTCTCGAGCTGTTTTTCTCATCCAGG
Seq C2 exon
GTCACCAATGTGGAGAAGCAGGAAGAGGAACAGACACCCAGGTTTCAAGAACACAGGCAGTCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000070882-31-31,33-31-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.218 A=NA C2=0.773
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=PU(15.9=65.5)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(5.7=100)
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGTCCTTGATAGTGGTCG
R:
TGTGACTGCCTGTGTTCTTGA
Band lengths:
315-714
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)