HsaALTD0004642-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000133256 | PDE6B
Description
phosphodiesterase 6B, cGMP-specific, rod, beta [Source:HGNC Symbol;Acc:8786]
Coordinates
chr4:661645-664542:+
Coord C1 exon
chr4:661645-661730
Coord A exon
chr4:661731-661795
Coord C2 exon
chr4:663835-664542
Length
65 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGG
5' ss Score
3.93
3' ss Seq
TCTTCTGTCTTCTCTTGCAGTAG
3' ss Score
11.01
Exon sequences
Seq C1 exon
GAGTTCTCTCGTTTCCACGAAGAGATCCTGCCCATGTTCGACCGACTGCAGAACAATAGGAAAGAGTGGAAGGCGCTGGCTGATGA
Seq A exon
GTATGAGGCCAAAGTGAAGGCTCTGGAGGAGAAGGAGGAGGAGGAGAGGGTGGCAGCCAAGAAAG
Seq C2 exon
TAGGCACAGAAATTTGCAATGGCGGCCCAGCACCCAAGTCTTCAACCTGCTGTATCCTGTGAGCACTGGTCCCATGGGGACCCTATGGCTCCCTCAATCTTCACCCACTAGGATTTGGGTTCTGCCTGTGGCTATTTGCTACAAGAGGTTAGGAAGCCCAAGAAAATGACTGAAGATCATTCTGGATATTTTAATTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCCGTGGCACGATCTCAGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCGATTCTCGTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCCCACCACCACACATGGCTAATTTTTGTATTTTCAGTACAGATGGGGTTTCACCATATTGGGCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCACCCGCCTCAGCTTCCTGAAGTGCTGGGATTACAGGCATGAGCCACCACGCCCAGCCTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133256-32-30,33-30-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=PD(23.5=66.7)
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATCCTGCCCATGTTCGA
R:
GTGGGTGAAGATTGAGGGAGC
Band lengths:
174-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)